Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1033 ATGGGAAGAGTGAAGCTTCAGATCAAGAAGATCGAGAACGCAACAAATAGACAGGTCACATTCTTAAAGAGGAGAAATGGACTCATCAAGAAGGCTTATGAACTTTCTGTACTTTGTGACATTGATGTGGCTCTAATCATGTTTTCTTTCTCCGGCAAAGCAAGTATCTTCTCTGGCGGTAAAAGCATTGAAGAAATTTTGGAACGATATATTAATCTTCCTGAACAAAAACGGGTTAGGTATGAGTTCCCGCGCTTATCCCATTATTTATCTGAGATAATCTTGTCTGTTTCTGTGTCCTATTTATGTATAATCTCAAGTTTATTTTCTTTCTCTGGCGTTTTTGTTGCTTTGCTTTCTTTCTGGGTTTTCTTGGAACCGCCCGATTCTGAAGGGTACAAAATGAAGAGCCCGATGATCGCTGACTCCCAGATTGAGCGAGCTCTGGAGGAAGAGTATATTTCACATGCAGCTACAGCTCCCCAGGTGCATCTTGCGAAACCCGGAGATGCACATGGATTTGGTGACGGAAGCTTGAAGAACTTTGTGGATTGGCTTCCGCAGAGTCACTCAAGTCCCGGAGACAGTTTAAACCATGATGATTTTGAACCAATTATTGACATCAACTCCACCCACTGGGGACCACTCCAGCCTCCAGGAGGTGGATCTTTTCTAGTTGCAGGACGGACTAGGGAAGGACAATTTCTTGAACTATTTGAAAGCTTGGCATTTCATTCTTATTTCACCGCTACAAAACTCGTCAAGCTCCAAGGGATATTGTGA 783 0.4278 MGRVKLQIKKIENATNRQVTFLKRRNGLIKKAYELSVLCDIDVALIMFSFSGKASIFSGGKSIEEILERYINLPEQKRVRYEFPRLSHYLSEIILSVSVSYLCIISSLFSFSGVFVALLSFWVFLEPPDSEGYKMKSPMIADSQIERALEEEYISHAATAPQVHLAKPGDAHGFGDGSLKNFVDWLPQSHSSPGDSLNHDDFEPIIDINSTHWGPLQPPGGGSFLVAGRTREGQFLELFESLAFHSYFTATKLVKLQGIL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1033 260 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Alju08g1033 260 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Alju08g1033 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju08g1033 260 PANTHER MADS BOX PROTEIN 3 90 - -
Alju08g1033 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju08g1033 260 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Alju08g1033 260 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Alju08g1033 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju08g1033 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju08g1033 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju08g1033 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1033 Alju-ChrAlju08 7807868 7810267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1033 1 78 Type I MADS-box Gene Family AT1G22130 73.077 2.34e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju08g1033 SRF-TF 5.1e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1033 08 7807868 7810267 Alju08g1033 08 7807868 7810267 ECH