Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1016 ATGGCCCTGGAAGCTATGAAGTCACCCACTGCCGCCGGCCCCTCCTTCCCCTTCCAGCCCTCCGATCTCCACCACCTGGAGCCGTGCCCCTGGGCCAAGCGCAAGCGCTCCAAGCGTGCCCGCCTCGACCAATCCGCCAGCTCCGAGGAAGAATACCTCGCCTTCTGCCTCATCATGCTCGCTCGCGACTCCACCAGTTCCGCCGCCTCATATGAACGCCGTGCCTCCCCGGCTCCCAAGCTCGCTTACAAGTGTTCCGTCTGCAACAAAGCCTTCTCCTCTTACCAAGCTCTTGGCGGACACAAGGCCAGCCATCGTAAACTCGCCAGTGAGGATCACAACTCTTCTTCCAACGTCACCAGTACCGCTTCTGCCTCCAACTCTGCATCCAACGGTGGAGGTAGGCTCCACGAGTGTTCAATCTGCCATAAGTCCTTCCCTACCGGACAGGCCTTGGGCGGACACAAGCGTTGCCACTACGAGGGTGGCGCCAGCAGCAGTGTTGTCACCACCGCTTCCGAGGGTGTGGGATCCGCCCACCGCGAATTCGATCTCAACATCCCCGCCTTCTCCTTGACGGTGGACGAGGAGGTGGAGAGCCCTCACCCACTGAAGAAGCCCCGCCTTTCCATGATGACAAACGACGGAATCCCTCAGCAAGTGAATTAA 669 0.6024 MALEAMKSPTAAGPSFPFQPSDLHHLEPCPWAKRKRSKRARLDQSASSEEEYLAFCLIMLARDSTSSAASYERRASPAPKLAYKCSVCNKAFSSYQALGGHKASHRKLASEDHNSSSNVTSTASASNSASNGGGRLHECSICHKSFPTGQALGGHKRCHYEGGASSSVVTTASEGVGSAHREFDLNIPAFSLTVDEEVESPHPLKKPRLSMMTNDGIPQQVN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1016 222 SUPERFAMILY beta-beta-alpha zinc fingers 83 159 IPR036236 -
Alju08g1016 222 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Alju08g1016 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Alju08g1016 222 MobiDBLite consensus disorder prediction 104 132 - -
Alju08g1016 222 MobiDBLite consensus disorder prediction 113 132 - -
Alju08g1016 222 Gene3D Classic Zinc Finger 81 159 - -
Alju08g1016 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Alju08g1016 222 MobiDBLite consensus disorder prediction 198 222 - -
Alju08g1016 222 Pfam C2H2-type zinc finger 137 160 - -
Alju08g1016 222 Pfam C2H2-type zinc finger 82 107 - -
Alju08g1016 222 MobiDBLite consensus disorder prediction 1 38 - -
Alju08g1016 222 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Alju08g1016 222 SMART c2h2final6 137 159 IPR013087 -
Alju08g1016 222 SMART c2h2final6 83 105 IPR013087 -
Alju08g1016 222 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 189 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1016 Alju-ChrAlju08 7695791 7696459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1016 1 211 C2H2 Transcription Factor Family AT1G27730 50.649 3.74e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju08g1016 zf-C2H2_6 1.6e-12 CL0361