Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju08g1007 | ATGGTTGTAGATGACGACTTTATGATTGTTGCCAAGTCTACTTTAACCTCTCGGTCCGCGCAATTTTCTGCAGCTCGCATTCCTCTTCCCCCTTTTCCTTATCCTTTTTTCCTTCCTCAATTTCTTCCTTTAATTTCATCTTCCTCTCAGATTGTCTGCTTCAGTATGGCATTTGCAGGAACAACCCAGAAATGCATGGCCTGTGAGAAAACAGTTTATTTGGTCGATAAGTTAACTGCAGATAATCGAGTGTACCACAAAGCTTGCTTCCGATGCCATCATTGTAAAGGAACCCTTAAGCTTAGCAACTACAATTCTTTCGAGGGAGTTCTGTACTGCAAGCCACACTTCGACCAATTGTTCAAAAGAACCGGCAGCCTTGAGAAAAGCTTCGAAGGGACGCCAAAAATTGCTAAACCAGAAAAAAGCATTGATAATGAGAAGCCTGCAGTGACCAAAGTGTCAAGTATGTTTGGTGGAACCAGGGAGAAATGTGCTGGTTGTCAGAAAACAGCTTATCCAACGGAGAGGGTTACTGTGAATGGAACTCCATACCATAAGAGTTGTTTCAAATGTTGCCATGGAGGGTGTGTTATAAGTCCCTCCAACTACATTGCACATGAGGGCAAACTCTACTGCAAACATCACCATACCCAGCTGATCAAGGAAAAGGGCAATTTGAGCCAGCTTGAAGGTGACCGCGACAAGAGTACTGTGCTTGATAAAATTACTGATGAACAAGTTGCTGCCCTCACTTAG | 759 | 0.4348 | MVVDDDFMIVAKSTLTSRSAQFSAARIPLPPFPYPFFLPQFLPLISSSSQIVCFSMAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPEKSIDNEKPAVTKVSSMFGGTREKCAGCQKTAYPTERVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHTQLIKEKGNLSQLEGDRDKSTVLDKITDEQVAALT | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju08g1007 | 252 | ProSiteProfiles | LIM domain profile. | 163 | 223 | IPR001781 | - | |
| Alju08g1007 | 252 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 91 | 131 | - | - | |
| Alju08g1007 | 252 | ProSiteProfiles | LIM domain profile. | 63 | 123 | IPR001781 | - | |
| Alju08g1007 | 252 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 58 | 90 | - | - | |
| Alju08g1007 | 252 | Gene3D | Cysteine Rich Protein | 59 | 129 | - | - | |
| Alju08g1007 | 252 | Gene3D | Cysteine Rich Protein | 160 | 229 | - | - | |
| Alju08g1007 | 252 | SMART | lim_4 | 64 | 116 | IPR001781 | - | |
| Alju08g1007 | 252 | SMART | lim_4 | 164 | 216 | IPR001781 | - | |
| Alju08g1007 | 252 | CDD | LIM1_SF3 | 61 | 123 | - | - | |
| Alju08g1007 | 252 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 157 | 190 | - | - | |
| Alju08g1007 | 252 | ProSitePatterns | LIM zinc-binding domain signature. | 65 | 99 | IPR001781 | - | |
| Alju08g1007 | 252 | FunFam | LIM domain and actin-binding 1 | 59 | 129 | - | - | |
| Alju08g1007 | 252 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 191 | 230 | - | - | |
| Alju08g1007 | 252 | PANTHER | OS06G0237300 PROTEIN | 58 | 148 | - | - | |
| Alju08g1007 | 252 | FunFam | LIM domain and actin-binding 1 | 159 | 229 | - | - | |
| Alju08g1007 | 252 | Pfam | LIM domain | 65 | 119 | IPR001781 | - | |
| Alju08g1007 | 252 | Pfam | LIM domain | 165 | 219 | IPR001781 | - | |
| Alju08g1007 | 252 | CDD | LIM2_SF3 | 165 | 225 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju08g1007 | Alju-ChrAlju08 | 7625748 | 7627234 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Alju08g1007 | LIM | 3e-11 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Alju07g1974 | 07 | 46008133 | 46009790 | Alju08g1007 | 08 | 7625748 | 7627234 | CCT | |
| Alju08g1007 | 08 | 7625748 | 7627234 | Alju08g1007 | 08 | 7625748 | 7627234 | ECH |