Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0995 ATGACTTTGCATCGGCCGTCTTCCGGTGGTGGCGCCGAGGTGCTCGATCTAGAAACTGCCGTGAAAGGTGGCGTTTTGGACGGCAAAGCTGCTCTACCCGGTAATGGTTGCAGCGACGGTGGCAAAATAGATCTGAAGGTGTTGCTTGAAGAGCTGGAGTCAGTTGAAGTGCCCTCTGTGTTCGTCTGTCCTATCTCGTTAGAGCCCATGCGAGAGCCTGTGACCATTTGCACGGGTCAGACCTATGACAGATCCAACATCCTCAAATGGTTCGCCCTGGGTCATAATACTTGCCCCACAACGATGCAGGAGCTTTGGGACGATTCAGTGACGCTGAACAGGACTCTCAGTCAATTAATCCATAGTTGGTTCTCGCAGAAGTACCTCTCATTGAATAAGCAGTTCCAGGATGTGCAGGGAAGAGCCCTGGAGCTCCTAGAGACACTCAAGAAGGTGAAGGGTCAAGCCAGAGTTCAAGCCCTTCGAGATCTCAGGCAGATTGTTACAACCCATGCGTCCACAAGGAAGACAGTTGTAGAAAATGGAGGGCTTGCTTTAATTTCTTCTTTACTGGGTCCTTTCACTTCCCACGCAGTTGGGTCAGAAGCAATTGGGATTCTAGTGAACTTGGATTTGAATTCAGAGGCGAAGAAAAATCTGATGCTTCCGGCGAAGATATCTTTGTTGGTCGATGTTATGAACGAAGGAACGATTGAGACAAAGATGAACTGTGCCAAATTGCTTGAAGTATTGTTGATGGAAGTGGATGAATCGGAGACGGAAATTTTGTCAAGCTTGAGTCTTTTGGTCGGATTATTGAGGCTAGTGAGGGATAAGAAACGCCCAAGTGGGGTCTTAACAGGACTCATGTTACTGAAGACAATCTGTTCCCACGAATCAGTGAGAAGCTCCATGGTAAGCCTAGGAGCAGTTGGTCAGTTGATTGAGCTTCTTCCAAGTTTAAACCATGATTGCCTAGAGATAGCTCTGTACATTCTAGAGGTGTTGTCAACTATCCCAGAGGGAAGACTGGCATTGAAAGAGAGCCCAAACATTATACCAAATGTGGTGAAGTTAATGATGAGAGTATCAGAGAGTAGCACTCAATTTGCATTGTCAATATTGTTGGCTATCTACAAGCTTGCCCCTGAAGAATGTGCTTCACAGGCGGTGGAGGCTGGTTTGGCTCCCAAGTTGCTGCTTGTGATTCAGAGTGGTTGCAACCCCGTGTTGAAGCAGATGTCTACTGAGTTCTTAAAAATGTGCAGTCTTAATTACTCCACTAGTCTTTTGATTTCTAAATGTATGCTCACTAGAACAATACGATGA 1329 0.4643 MTLHRPSSGGGAEVLDLETAVKGGVLDGKAALPGNGCSDGGKIDLKVLLEELESVEVPSVFVCPISLEPMREPVTICTGQTYDRSNILKWFALGHNTCPTTMQELWDDSVTLNRTLSQLIHSWFSQKYLSLNKQFQDVQGRALELLETLKKVKGQARVQALRDLRQIVTTHASTRKTVVENGGLALISSLLGPFTSHAVGSEAIGILVNLDLNSEAKKNLMLPAKISLLVDVMNEGTIETKMNCAKLLEVLLMEVDESETEILSSLSLLVGLLRLVRDKKRPSGVLTGLMLLKTICSHESVRSSMVSLGAVGQLIELLPSLNHDCLEIALYILEVLSTIPEGRLALKESPNIIPNVVKLMMRVSESSTQFALSILLAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTEFLKMCSLNYSTSLLISKCMLTRTIR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0995 442 CDD RING-Ubox_PUB 58 110 IPR045210 -
Alju08g0995 442 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Alju08g0995 442 Gene3D - 134 435 IPR011989 -
Alju08g0995 442 SUPERFAMILY RING/U-box 51 127 - -
Alju08g0995 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 133 IPR013083 -
Alju08g0995 442 PANTHER WDSAM1 PROTEIN 54 429 IPR045185 GO:0061630
Alju08g0995 442 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Alju08g0995 442 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Alju08g0995 442 SUPERFAMILY ARM repeat 136 425 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0995 Alju-ChrAlju08 7539521 7540849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0995 1 442 U-box Gene Family AT5G65920 58.222 0.0 523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0995 08 7539521 7540849 Alju08g0995 08 7539521 7540849 ECH