Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0988 ATGGGGGGTAATGAAAACTCCATGGGGTTTCAAAACAGAAACGAGAGTTTTCTGAGTCGTCCGGTATCGGGTTTGGGCACCAATGTTTCAGATATAAGCAATCCTTTTCTTGGCTCATCTGCCTGGGATCCACTTTTTTCATTGAGTCAGACTCATACCCTTGGAGGCTCATCATTGGTTTCACATAGTGACTTTGCCAATTCTTCTTACCCGAGTGTCTTGGAAAATCAGGGAATGAGTGGCTCCTCTCACCTTGTTCACTATATGCCTGACTCAAATTTTGCTGATATGATCCCAAAGATCCCTTCCTATGGAAATGGTGATATAGCTAATGCAGGATATGCGTTAAGTTATAATCCAAATAAGGACGCAGGCATTGGAACGGCTCCTATAAATGATGACGAATTGCAGGGTGATCGTTCCTCTCCTGAAGAGGGAGCCACATCTTCACCTATTGGAAATAGAAGAAAACGAGGGCTTGATCATAATCCTACTTTCAGTCCAAGTAAGAGCTCTGATGGGGAAGCACTTAAGGGTTCATCAGGGAAAAGCTCAGATGGTGTGAAAGAACAAGATGATAAGAAGCCAAAATTTGATCAAAATTCAAGTGCAGATTTGCGTGGTAAGCAATCAGGGAAGCAAGCTAAAGACAACTCTCTGAATGGAGAACCTCCCAAAGAAAATTTCATCCATGTGAGAGCTCGAAGAGGTCAAGCCACAAATAGTCATAGCCTTGCAGAAAGGATAAGGAGAGAGAAGATTAGTGAAAGAATGAAATTACTTCAAGAACTTGTTCCCGGATGCAACAAGATAACAGGCAAAGCAGTAATGCTTGATGAGATTATTAACTATGTGCAGTCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACCGTGAACCCTGAACTGAATCTTGATGTAGAGCGGATCCTATCCAAAGATATTCTGCAGTCACGCATTGGACATGGAGCTATTGGTGGATATGGAGGTGGAATCATAAACTCAAATCACATATTTGCCGGTGGAAGTTTTCAGGGGACCCTGGGAAGCATGCCCAGCACATCACCAAATATCCCTCCTTTGCCTCAGAGTGTTATGGATCATGAGCTCCAGAGCATATATGGAATGGGATACGATTCTAATTCAGCTCTTCAAAATTTGGGACCACAAACAGGGCGGTAG 1191 0.4316 MGGNENSMGFQNRNESFLSRPVSGLGTNVSDISNPFLGSSAWDPLFSLSQTHTLGGSSLVSHSDFANSSYPSVLENQGMSGSSHLVHYMPDSNFADMIPKIPSYGNGDIANAGYALSYNPNKDAGIGTAPINDDELQGDRSSPEEGATSSPIGNRRKRGLDHNPTFSPSKSSDGEALKGSSGKSSDGVKEQDDKKPKFDQNSSADLRGKQSGKQAKDNSLNGEPPKENFIHVRARRGQATNSHSLAERIRREKISERMKLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDVERILSKDILQSRIGHGAIGGYGGGIINSNHIFAGGSFQGTLGSMPSTSPNIPPLPQSVMDHELQSIYGMGYDSNSALQNLGPQTGR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0988 396 MobiDBLite consensus disorder prediction 185 202 - -
Alju08g0988 396 MobiDBLite consensus disorder prediction 126 226 - -
Alju08g0988 396 Pfam Helix-loop-helix DNA-binding domain 241 289 IPR011598 GO:0046983
Alju08g0988 396 CDD bHLH_AtBPE_like 228 313 - -
Alju08g0988 396 MobiDBLite consensus disorder prediction 164 179 - -
Alju08g0988 396 SMART finulus 244 294 IPR011598 GO:0046983
Alju08g0988 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 288 IPR011598 GO:0046983
Alju08g0988 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 305 IPR036638 GO:0046983
Alju08g0988 396 FunFam Basic helix-loop-helix transcription factor 235 307 - -
Alju08g0988 396 Gene3D - 235 310 IPR036638 GO:0046983
Alju08g0988 396 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 149 353 IPR024097 GO:0006355
Alju08g0988 396 MobiDBLite consensus disorder prediction 203 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0988 Alju-ChrAlju08 7479918 7482033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0988 1 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.097 6.60e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju08g0988 HLH 7.9e-07 No_clan