Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0978 ATGGGAAGAGCTCCTTGCTGCGACAAAGCGAACGTGAAGAGAGGCCCTTGGTCCCCTGAAGAAGATGCCAAGCTCAAGTCCTATATCGAACAACACGGCACCGGCGGTAACTGGATCGCTTTGCCCCAAAAGATCGGGCTGAAGAGGTGTGGGAAGAGTTGCCGGCTAAGGTGGCTGAACTACCTTCGGCCCAATATAAAGCATGGGGGTTTCTCCGAGGAAGAAGACAACATCATATGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCTGCTCAATTGCCAGGAAGAACAGATAATGATATAAAGAACTACTGGAACACAAGGTTGAAGAAGAAGCTTCTGGGAAAGCACCGTAAAGAACATCAGGCACGTTCCAGGGGCAAGAGTAAGCAGGGAATTATAAATAAGAGTAGTATTGTTGGGATCAATTCATCGATCCTTCCAGAAGAAAATAGTGCTGGTCAGGTTCTTGAGGCTCATCAACAAAACCCGTATTGGCCTTGTTACCCCCAGATGATGATGCCTGTGATACCACCCATGTTGTCATACTCAGACCAAGTCCAAGGTTTCAATGACCAGGATTCCATCAGAAAACTTCTTATCAAGCTTGGAGGAACCTTTTCTTACCAGCCTGAAGGGTTCAATTTTCAATTACCAGATGCTACTAGTACTGATCCCTCCGCACAATCACCAATTTATCAAGTTTCTTCTTCTTCTGCTTCTGCTTCTGCAAGTGCTATGAACAATGATAACCAAATAAAATTCCCTCTGCTCCATTACCAATCTGGACTTAATAGTAACTTGGTGCAAGGAAGCAGCACTTTCAATCAAGCACATGAAGAAATGTCTGTATCTTATCCATCTAGCCTAGATGGCCTGGAATATTTTATCAATCATTATGATAAGATAGACACTACGAGCTCGTGTGACACCAACAACATAGTTTGTCCTCCTTTACTTTCCTCCGATTATGAACAATGTATGCCAACGCCTCAGGAATTTGCTTTTCAGGAGTTGAGGTATCCAGGCGCCCACTAG 1050 0.4486 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEHQARSRGKSKQGIINKSSIVGINSSILPEENSAGQVLEAHQQNPYWPCYPQMMMPVIPPMLSYSDQVQGFNDQDSIRKLLIKLGGTFSYQPEGFNFQLPDATSTDPSAQSPIYQVSSSSASASASAMNNDNQIKFPLLHYQSGLNSNLVQGSSTFNQAHEEMSVSYPSSLDGLEYFINHYDKIDTTSSCDTNNIVCPPLLSSDYEQCMPTPQEFAFQELRYPGAH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0978 349 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Alju08g0978 349 CDD SANT 71 113 IPR001005 -
Alju08g0978 349 Gene3D - 7 68 - -
Alju08g0978 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Alju08g0978 349 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Alju08g0978 349 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Alju08g0978 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Alju08g0978 349 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Alju08g0978 349 PANTHER OS09G0431300 PROTEIN 1 270 - -
Alju08g0978 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Alju08g0978 349 SMART sant 13 64 IPR001005 -
Alju08g0978 349 SMART sant 67 115 IPR001005 -
Alju08g0978 349 CDD SANT 16 62 IPR001005 -
Alju08g0978 349 Gene3D - 70 140 - -
Alju08g0978 349 FunFam Transcription factor RAX3 70 143 - -
Alju08g0978 349 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0978 Alju-ChrAlju08 7428353 7429635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0978 1 206 MYB Transcription Factor Family AT3G49690 61.650 3.05e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju08g0978 Myb_DNA-binding 1.8e-14 CL0123