Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0952 ATGGATATCGGAAAACAACGCCGGCATGATCAAGAGGCAGATATGGATGATTGTAGCAGCGTTCGTGGCCCTAAACATGAAAAGGACAGAGAAGAAATCAACAGAATCTGCATCAGTGGTCACAAGGATTCATCATCATCATCATCATCAGGAAAATGGAAGTGTTCAGATCAGATCTGGGTGACGCAAGAAAAGAAACAACCGAGCACCTGCCCAGAAAGTAACAGTACGGAGTGTCACAAGGCATCAAGTTATAGTCCAACATGGCAACACCACCGACGACGACGGCGACGGCCCTCTAATAACACCAATAGGGTTTGTTCAGATTGCAGCACAACCAGTACTCCACTTTGGAGGAGTGGCCCTAATGGTCCCAAGTCACTTTGCAATGCGTGTGGGATTAGGCAGAGAAAAGCAAGAAAGGCAATGGAAGAAGAAGGTCGTGGATGGTGTGGAAAGACCAGATTAGTGCATAAGAACAAGAGGCAAGTAACTATGAAGAACAAGTCTGATTATTATGAGTGTCGAGGGGAAAGGAAAGTGGCTCTCCGGGATTTTGAATTCACTTTTAGCGGAAACTCCGTCGTTTTTCAGCAACCACTGTTCCCACGGGATGAAGTAATTGAAGGGGCGATGCTTCTCATGGATTTATCTTGTGGCCTTTTTCCCTTTTAG 675 0.4593 MDIGKQRRHDQEADMDDCSSVRGPKHEKDREEINRICISGHKDSSSSSSSGKWKCSDQIWVTQEKKQPSTCPESNSTECHKASSYSPTWQHHRRRRRRPSNNTNRVCSDCSTTSTPLWRSGPNGPKSLCNACGIRQRKARKAMEEEGRGWCGKTRLVHKNKRQVTMKNKSDYYECRGERKVALRDFEFTFSGNSVVFQQPLFPRDEVIEGAMLLMDLSCGLFPF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0952 224 Gene3D - 101 180 IPR013088 GO:0006355|GO:0008270
Alju08g0952 224 CDD ZnF_GATA 106 138 IPR000679 GO:0006355|GO:0043565
Alju08g0952 224 Pfam GATA zinc finger 107 141 IPR000679 GO:0006355|GO:0043565
Alju08g0952 224 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 25 221 - -
Alju08g0952 224 ProSitePatterns GATA-type zinc finger domain. 107 132 IPR000679 GO:0006355|GO:0043565
Alju08g0952 224 MobiDBLite consensus disorder prediction 66 107 - -
Alju08g0952 224 ProSiteProfiles GATA-type zinc finger domain profile. 101 137 IPR000679 GO:0006355|GO:0043565
Alju08g0952 224 MobiDBLite consensus disorder prediction 1 53 - -
Alju08g0952 224 SMART GATA_3 101 171 IPR000679 GO:0006355|GO:0043565
Alju08g0952 224 MobiDBLite consensus disorder prediction 39 53 - -
Alju08g0952 224 MobiDBLite consensus disorder prediction 1 38 - -
Alju08g0952 224 MobiDBLite consensus disorder prediction 87 101 - -
Alju08g0952 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 144 - -
Alju08g0952 224 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0952 Alju-ChrAlju08 7238580 7239842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0952 46 221 C2C2-Gata Transcription Factor Family AT4G26150 31.925 4.44e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju08g0952 GATA 5.7e-17 CL0167