Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0942 ATGTTTTTCCTGGTACAAGAGCCCAAGGATGCTGAATGGGAATCAAATCTCCAGGGATTTCTTGAAAGATGCCCATCAGAGCCAAAACAAAACCCCTTAACTGACACCATAAACACGCGGCGAGTACTGTCTTTGCCACTGAACAGATTTCCCTCTTTCTGGTTCTTCTCTGTTCTCTTTCAGTTCTCTGCAACTCCTTGTATGGAGGGAGTGAGAGTGAAGGTGGAAGAAACGGAGGCATGTGGTGCTGGTTCATCATCTTCGCCTTCATCTTCGGTTTCAAGTCTCTCTCCTCGGCCTATGGAAGGGCTTCACGAGATGGGGCCTCCTCCATTTCTTATCAAGACCTTTGAAATGGTGGAAGACCCATCCACCGACTCTGTTGTTTCTTGGAGCCTTGCTCGTAACAGCTTCATTGTTTGGGACTCTCACAAGTTCTCCGCTACCGTTCTTCCTCGCTACTTTAAGCACAGTAATTTTTCCAGCTTCATTCGCCAGCTCAACACCTATGGATTTAGAAAAGTTGATCCCGATCGATGGGAATTTGCAAACGAAGGGTTTTTGGGTGGACAGAGGCACTTGTTGAAGACAATCAAGAGAAGAAGAAATGTGTCGCAGAGTGTACAGCAAGAACGAGGGATTGCTTGTGTCGAACTGGGACAATACGGATTGGAAGGCGAGCTTGATAGGTTGAGAAGAGACAGGTCGGTGATCATGGCCGAAATTGTGAAATTGAGACAGCAACAGCAGAATTCACGGGCGCAACTGATTGCGATGGAGGACAGATTACAAACCACAGAGAAGAAACAGCAACAGGAGAAAGAGGAGACTAACTGCCAGCCCAAGTGTGGAGAATATACAGGATTATTCTGTGTCAGTGGCAGTGCCTAG 891 0.4714 MFFLVQEPKDAEWESNLQGFLERCPSEPKQNPLTDTINTRRVLSLPLNRFPSFWFFSVLFQFSATPCMEGVRVKVEETEACGAGSSSSPSSSVSSLSPRPMEGLHEMGPPPFLIKTFEMVEDPSTDSVVSWSLARNSFIVWDSHKFSATVLPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQRHLLKTIKRRRNVSQSVQQERGIACVELGQYGLEGELDRLRRDRSVIMAEIVKLRQQQQNSRAQLIAMEDRLQTTEKKQQQEKEETNCQPKCGEYTGLFCVSGSA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0942 296 FunFam Heat shock transcription factor 1 105 202 - -
Alju08g0942 296 ProSitePatterns HSF-type DNA-binding domain signature. 151 175 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g0942 296 Gene3D - 105 202 IPR036388 -
Alju08g0942 296 Pfam HSF-type DNA-binding 112 201 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g0942 296 SMART hsfneu3 108 201 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g0942 296 MobiDBLite consensus disorder prediction 80 101 - -
Alju08g0942 296 PRINTS Heat shock factor (HSF) domain signature 150 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g0942 296 PRINTS Heat shock factor (HSF) domain signature 163 175 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g0942 296 PRINTS Heat shock factor (HSF) domain signature 112 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g0942 296 Coils Coil 228 276 - -
Alju08g0942 296 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 98 272 IPR027725 -
Alju08g0942 296 MobiDBLite consensus disorder prediction 81 98 - -
Alju08g0942 296 SUPERFAMILY "Winged helix" DNA-binding domain 108 201 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0942 Alju-ChrAlju08 7145085 7146679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0942 98 272 HSF AT2G26150 74.011 4.58e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju08g0942 HSF_DNA-bind 1.9e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0942 08 7145085 7146679 Alju08g0942 08 7145085 7146679 ECH