Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0938 ATGCCATTTCTTAAGAGAGAGCAAAATTCCCCATCCATTCGCCAATCAATCCCTGTCTCTTCAATTTACCCTTACGGGCATTTTCAGGGCATCTTCTCTTCTACGTCGACTTCCTCAACTCCTCCAGCATCGAAGATCCGAGGAGTTTGGGAAACCCTAAACCCACACCCTACTTGCTTTCTCAGTTCCTACTCTCATCTGTCAAAGTTTGCAATCATGGCTGGAGTGGCACCGGAGGGATCACAATATGATACTCGTCAATATGATGCGAAGATGAATGAGTTGCTTGGATCTGATGGTCAAGACTTCTTTACTAGTTATGATGAAGTTTATGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTCCTTAGGGGTATTTATGCATATGGTTTTGAGAAGCCTTCTGCAATCCAGCAAAGGGGAATTGTACCTTTCTGCAAGGGTCTTGATGTAATTCAGCAAGCCCAATCTGGGACTGGAAAAACTGCGACTTTCTGCTCTGGAATATTGCAGCAGCTTGATTATAGCTTAGTTGAATGCCAGGCCCTGGTACTAGCCCCCACTCGTGAGCTTGCTCAACAAATTGAGAAGGTCATGCGTGCACTAGGTGATTATCTTGGAGTTAAGGTTCATGCTTGTGTGGGTGGGACCAGTGTTCGTGAAGATCAACGCATCCTCTCAAGTGGAGTCCATGTTGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTGCGGAGACAATCTCTGCGCCCTGATAATATTAAAATGTTTGTGTTGGATGAGGCAGATGAGATGCTTTCTCGAGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCACCAAAAATTCAGGTCGGTGTTTTCTCTGCCACTATGCCACCTGAGGCCTTGGAGATCACAAGGAAGTTCATGAACAAACCTGTGAGGATTCTGGTAAAACGTGATGAGCTTACCCTTGAGGGTATCAAGCAATTTTATGTCAATGTTGATAAGGAGGAATGGAAGCTTGAGACTCTTTGTGATCTTTACGAGACATTAGCAATCACCCAAAGTGTTATCTTTGTGAACACTAGGCGCAAGGTAGACTGGTTGACAGACAAGATGCGAGGCCGAGATCACACGGTTTCAGCCACCCATGGAGATATGGACCAGAACACTAGGGATATCATTATGCGTGAATTCCGTTCTGGTTCCTCCCGTGTGTTAATCACCACAGACCTGTTGGCCCGTGGTATTGATGTCCAGCAAGTCTCACTTGTGATTAACTATGACCTGCCTACTCAGCCAGAGAACTATCTCCATCGAATTGGTCGTAGTGGTCGGTTCGGAAGAAAAGGTGTTGCGATCAATTTTGTGACGAAGGACGACGAAAGGATGCTGTTTGACATCCAGAGGTTTTACAACGTGGTGATTGAGGAGCTTCCTGCCAATGTTGCTGATCTTCTTTGA 1458 0.4554 MPFLKREQNSPSIRQSIPVSSIYPYGHFQGIFSSTSTSSTPPASKIRGVWETLNPHPTCFLSSYSHLSKFAIMAGVAPEGSQYDTRQYDAKMNELLGSDGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVIEELPANVADLL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0938 485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 313 IPR014001 -
Alju08g0938 485 Gene3D - 102 320 IPR027417 -
Alju08g0938 485 Gene3D - 321 485 IPR027417 -
Alju08g0938 485 Pfam DEAD/DEAH box helicase 137 298 IPR011545 GO:0003676|GO:0005524
Alju08g0938 485 CDD SF2_C_DEAD 325 455 - -
Alju08g0938 485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 485 IPR001650 -
Alju08g0938 485 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Alju08g0938 485 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Alju08g0938 485 SMART ultradead3 131 328 IPR014001 -
Alju08g0938 485 PANTHER RNA HELICASE 92 469 - -
Alju08g0938 485 FunFam Eukaryotic initiation factor 4A-III 320 485 - -
Alju08g0938 485 CDD DEADc_EIF4A 116 314 - -
Alju08g0938 485 SMART helicmild6 365 446 IPR001650 -
Alju08g0938 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 466 IPR027417 -
Alju08g0938 485 FunFam Eukaryotic initiation factor 4A-II 100 319 - -
Alju08g0938 485 Pfam Helicase conserved C-terminal domain 338 446 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0938 Alju-ChrAlju08 7125248 7128393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0938 73 485 Eukaryotic Initiation Factors Gene Family AT1G72730 89.614 0.0 774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0938 08 7125248 7128393 Alju08g0938 08 7125248 7128393 ECH