Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0882 ATGGAGAATGACTATACCGAGGACATGGACATCGAAGTCCTCCATTCGATGTGGCCTGAAGATATTGGAACTGATGTTGGCAAAAAATTTAATATAGAAAAGCCTGGAAAGGACCAAGATATGTTGGAAGAGATTATAATGATGGAATCAACTATAGTTGATTTCAAGCGTCTCATGGAGCTCACAAATTGTACAGATAAAGGTTCTTCTCAACTTTCACACCTTATGAAACACTTGGAGTATAAGCAGGCCAACGCCTTGCAACTTCTCAGAGAAGAATTTGACAACCTAAGCAAACAAAGGCATGAGGTTGAGTTGAGGAAGTTGCAGATATTGGAGGAGCTTCAGTTCGAGGAAGAAACATATGGCGACAAACGTCCAGTTTCTATTTTGGATGAAATTTATGATTTATGGCAAGATGTACCAAGAAGGAAAAAATGTGAAGTTGTTGTTCAGAACAAGAGAATTGAAATAGACGCCGAGTATGATACAAGTGTATATTGGAAACAGAAGGCGCTGGATTTGGAAAAAATGTTGGAGGCAAGTGTCCAAAGAGAGCAGATACTTGCAGAGAAGTTGCAAGAAAGTATAAAGAATCTTGAGAAGCAGTCCTCACCTGTAGAAGAACTGTCCCAGATTCTGAAAAGGGCAGATAATTTCTTGCATTTTGTACTCCAGAATGCACCTGTGGTTATTGGTCATCAGGACAAAGAGTTGCGATATCGATTTATCTATAATCATTTTCCAAGTTTGCACGAGGAGGATATCATTGGAAAAACAGATGTTGAAATTTTCACAGGATCTGGTGTTAAAGAATCTCAAGATTTTAAGAGAGAAGTTCTAGAAAAAGGCTTGCCTGCGAAAAGGGAAATTACTTTCGAGACAGAATTATTTGGTTCAAAGACATTCTTGATTTATGTTGAACCTGTCTTCAGCAAGACAGGGGAGACCCTAGGAATAAACTACATGGGAATGGATGTCACAGATCAGGTGAGAAAAAGAGAAAGGATGATGAAGATCCGGGAAGAAATTGCAGTTCAGAAAGCGAAGGAAACAGAATTGAATAAAACCATCCACATTACAGAGGAGACTATGAAAGCAAAACAAATGTTGGCAACCATGTCTCATGAGATAAGATCCCCATTGTCTGGGGTTGTTAGCATGGCTGACATTCTTTCGAGGACAAAACTTGACCGCGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTAATGAAGTTAGAAGCAACCAAGTTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACTTCTGCGGCTTCACTGCAGAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTACCAACTGAGGTCATTGGAGATGTTTTAAGGATTCGGCAAATCCTCACAAATTTAGTCAGCAACGCTATCAAGTTTACTCATGAAGGCAAGGTTGGTGTAAATCTTTATGTTGTGCCAGAGCCATCTTTTGCTAAAGCAGAAGTAAGCCTCCAGAAGACCAGTGCAGACCAGTCTAGCATTTCAGGGAATGGAGTAGAAGAGATTAAGTATCTCTCAATATCTCAAAATAGCAGTAACCAAAATCAAGCTTTGAGTGATGAAGGTAGATCTCCGGTTAAAAGCGAATGCTTAATGAATGGAGGTACTGAGGAACAACCTCAATCAACTGAAACAACAGTGTGGATACGTTGTGATGTCTATGACACAGGAATTGGAATACCAGAGAAGGCTTTACCTACTTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCATGCAAGAAAGTATGGTGGGACAGGGCTGGGACTAGCAATATGCAAACAACTGGTTGAGTTAATGGGTGGTCGTCTTACTGTGACTAGCAAAGAACAATGTGGTTCTACATTTACCTTTATATTGCCATATAAGGTTTCAACTATTTGTGATCATTCTGATGAGCCCTCAGATACAGAGGATGATGATGATGCTGCGTCTGATGATGCTGCGGGCTTTTTCCAATTTCAGCCACCCTCTTTGGGCTCTCTATTCTCCTCCCATGGATCTAGCAGGGCCCAAAAATTATTACCTCAAGAAATTGGGTGTGCAACCTCGCGTAAATTCAATAGGTTTTCAGAAAATTCCAACGCAATTTCCTCTGATAATGTCAAATCAAAAGAAATAACTTCAGATGAGGTTGCATCCTCAATAACTGATGGCCCAGGCATATCTGAATCTGCATGTTCATCGAGTCACAGCCCAGAGATAGAGAATGAAAATGTAGATAGAAGAAACAAATCACAAAATGGCAGTGCAGATTCTTCATATCACAGGGAGTTGGATCAAGATCGGACAGCTATAGCAACAATGCCAAGAGAACAAGCACATCAGAGTCAAGAAAGAGCAGAGATTGCCTCACAATGCGTCACTAGCAGCAGTACTTCAGAAGTAGCAAATCCAGATTTAAAGCCCAAGATCCTTGTCGTGGAGGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGCAATTAGGTCATAGCATAGATGTTGTGAATAACGGAGTGGAAGCTGTATGTGCCGTTCAGCGCCAGAGCTATGACCTAATTCTCATGGATGTGTGCATGCCAGTTATGAATGGTCTACAATCAACAAGATTGATTCGTTCTTTTGAAGAAACTGGTAACTGGGATGCTGCAAGAGAAGCTGGGATTGTGCTAAATCTACCAGCTTCATCATGCTTATTTGCCACTAAGTCCAACCACATTCCCATTATTGCGATGACAGCAAATGCATTGTCGGAGAGTGCTGAAGAGTGTTATGCAAATGGTATGGACTCATTTGTATCAAAACCTGTGACTTTCCAAAAATTGAAAGATTGTCTTGAACAGTACTTACAGTGA 2955 0.4054 MENDYTEDMDIEVLHSMWPEDIGTDVGKKFNIEKPGKDQDMLEEIIMMESTIVDFKRLMELTNCTDKGSSQLSHLMKHLEYKQANALQLLREEFDNLSKQRHEVELRKLQILEELQFEEETYGDKRPVSILDEIYDLWQDVPRRKKCEVVVQNKRIEIDAEYDTSVYWKQKALDLEKMLEASVQREQILAEKLQESIKNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLHEEDIIGKTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKTGETLGINYMGMDVTDQVRKRERMMKIREEIAVQKAKETELNKTIHITEETMKAKQMLATMSHEIRSPLSGVVSMADILSRTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTSAASLQKILTLEGHVADDVPTEVIGDVLRIRQILTNLVSNAIKFTHEGKVGVNLYVVPEPSFAKAEVSLQKTSADQSSISGNGVEEIKYLSISQNSSNQNQALSDEGRSPVKSECLMNGGTEEQPQSTETTVWIRCDVYDTGIGIPEKALPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEQCGSTFTFILPYKVSTICDHSDEPSDTEDDDDAASDDAAGFFQFQPPSLGSLFSSHGSSRAQKLLPQEIGCATSRKFNRFSENSNAISSDNVKSKEITSDEVASSITDGPGISESACSSSHSPEIENENVDRRNKSQNGSADSSYHRELDQDRTAIATMPREQAHQSQERAEIASQCVTSSSTSEVANPDLKPKILVVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVCAVQRQSYDLILMDVCMPVMNGLQSTRLIRSFEETGNWDAAREAGIVLNLPASSCLFATKSNHIPIIAMTANALSESAEECYANGMDSFVSKPVTFQKLKDCLEQYLQ 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0882 984 FunFam Histidine kinase 5 208 343 - -
Alju08g0882 984 SMART HKATPase_4 477 661 IPR003594 -
Alju08g0882 984 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 477 659 IPR003594 -
Alju08g0882 984 PRINTS Bacterial sensor protein C-terminal signature 621 639 IPR004358 GO:0016310|GO:0016772
Alju08g0882 984 PRINTS Bacterial sensor protein C-terminal signature 645 658 IPR004358 GO:0016310|GO:0016772
Alju08g0882 984 PRINTS Bacterial sensor protein C-terminal signature 586 600 IPR004358 GO:0016310|GO:0016772
Alju08g0882 984 CDD HisKA 368 427 IPR003661 GO:0000155|GO:0007165
Alju08g0882 984 Gene3D PAS domain 208 342 - -
Alju08g0882 984 ProSiteProfiles Histidine kinase domain profile. 373 661 IPR005467 -
Alju08g0882 984 Coils Coil 87 107 - -
Alju08g0882 984 Coils Coil 183 210 - -
Alju08g0882 984 CDD HATPase_EvgS-ArcB-TorS-like 482 658 - -
Alju08g0882 984 ProSiteProfiles Response regulatory domain profile. 841 983 IPR001789 GO:0000160
Alju08g0882 984 MobiDBLite consensus disorder prediction 738 771 - -
Alju08g0882 984 SMART HisKA_10 366 431 IPR003661 GO:0000155|GO:0007165
Alju08g0882 984 Pfam His Kinase A (phospho-acceptor) domain 368 431 IPR003661 GO:0000155|GO:0007165
Alju08g0882 984 MobiDBLite consensus disorder prediction 738 795 - -
Alju08g0882 984 MobiDBLite consensus disorder prediction 550 580 - -
Alju08g0882 984 MobiDBLite consensus disorder prediction 667 687 - -
Alju08g0882 984 Gene3D - 836 984 - -
Alju08g0882 984 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 420 660 IPR036890 -
Alju08g0882 984 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 4 983 - -
Alju08g0882 984 Gene3D - 353 431 - -
Alju08g0882 984 MobiDBLite consensus disorder prediction 807 834 - -
Alju08g0882 984 Pfam Response regulator receiver domain 842 909 IPR001789 GO:0000160
Alju08g0882 984 Gene3D - 432 665 IPR036890 -
Alju08g0882 984 FunFam Histidine kinase 5 834 984 - -
Alju08g0882 984 SUPERFAMILY CheY-like 840 984 IPR011006 -
Alju08g0882 984 SMART REC_2 840 979 IPR001789 GO:0000160
Alju08g0882 984 CDD REC_hyHK_CKI1_RcsC-like 842 979 - -
Alju08g0882 984 FunFam Putative histidine kinase 5 354 431 - -
Alju08g0882 984 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 431 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0882 Alju-ChrAlju08 6695544 6699773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0882 1 984 Histidine Kinase Gene Family AT5G10720 57.964 0.0 1093
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju08g0882 HATPase_c 1.9e-27 CL0025