Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0878 ATGGCTTCCAAGCTCTGTGACTCCTGCAAGTCCGCCACCGCCACCCTCTTCTGTCGCGCCGACTCCGCCTTCCTCTGCCTCGGCTGTGACTCTAAGGTCCATGCTGCCAACAAGCTCGCTTCCCGCCACGCGCGTGTCTGGGTCTGCGATGTCTGCGAGCAGGCTCCCGCTCACGTCACCTGCAAGGCTGACGCTGCTGCTCTCTGCATCACCTGCGACCGTGACATCCACTCTGCCAATCCACTCGCTCGTCGTCACGAGCGCGTCCCCGTAACTCCCTTCTATGATCCCGTCCACTCCGTCGGCGTCCCGTCCGGCGCTGCCATCAACTTCCTCAACGACCGTTACTTCTCCGACGCCGATGCTGATGCTGATGCTGATGTCAGCAGGGAAGAGGCGGAAGCGGCTTCTTGGTTGCTTCCTAACCCTTCCAATCCGAAGGCTGTGGAGAGCCCAGATCTGAACTCCGGTGAGTATGGGTTTCCCGAAATGGAGCCTTGCCTAGATCTGGATTTCGGGCCGGTGGATCCAAAGGTGGAAGAAGCTCAGGAGCAGAACAGTTCCGGCACCGACGGTGTTGTGCCGGTACAGAGCAAGAGTGCGCATATTCCATCCCTCAACGACCACTACTATGACATGGAATTGACCGGGCCCAAGAATTTCACCTGCGGTTACAACGGCAGCCAGTGCCTGAGCCAGAGTGTGTCGTCGTCTTCCATGGATGTCGGGGTTGTTCCAGACGGGAATGCGATATCGAACGGTTACAGCAAGACGATGATGGGGAGTGAGAATCAGACGGTGCAGATATCAGCCGCCGACAGGGAAGCTAGGGTATTGAGGTACAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACCATTCGGTACGCTTCCAGGAAAGCATATGCTGAAACAAGACCCAGGATCAAAGGCAGATTCGCAAAACGATCGGAGGTAGACCGCTTTGGAGGATACGGCGTCGTACCAAGCTGTTGA 996 0.5723 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCDVCEQAPAHVTCKADAAALCITCDRDIHSANPLARRHERVPVTPFYDPVHSVGVPSGAAINFLNDRYFSDADADADADVSREEAEAASWLLPNPSNPKAVESPDLNSGEYGFPEMEPCLDLDFGPVDPKVEEAQEQNSSGTDGVVPVQSKSAHIPSLNDHYYDMELTGPKNFTCGYNGSQCLSQSVSSSSMDVGVVPDGNAISNGYSKTMMGSENQTVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEVDRFGGYGVVPSC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0878 331 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 319 IPR045281 GO:0009909
Alju08g0878 331 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Alju08g0878 331 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Alju08g0878 331 CDD Bbox1_BBX-like 5 48 - -
Alju08g0878 331 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Alju08g0878 331 Pfam CCT motif 274 316 IPR010402 GO:0005515
Alju08g0878 331 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Alju08g0878 331 SMART bboxneu5 49 91 IPR000315 GO:0008270
Alju08g0878 331 SMART bboxneu5 1 48 IPR000315 GO:0008270
Alju08g0878 331 ProSiteProfiles CCT domain profile. 274 316 IPR010402 GO:0005515
Alju08g0878 331 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0878 Alju-ChrAlju08 6673446 6674516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0878 1 330 C2C2-CO-like Transcription Factor Family AT5G24930 60.383 4.23e-133 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Alju08g0878 zf-B_box 7.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0878 08 6673446 6674516 Alju08g0878 08 6673446 6674516 ECH