Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0845 ATGCTGGCTAATGTTGCCGTCCAAACACATCCACCTCCCTCTTTTCTTCAATTTAAAGTTAGCATCTCCATATATCTTCCCCGACCGCCAATTTTTAATTTGATATTGTCCCTGTTCCGGCGAATTCCGGGTACTCTGCCGCCAAGATCCGGCGGCGACTGGCAATTTTTGCACACTGCGATCATGAGTAGTCTGGTTGAGAGGCTTCGAGCAAGATCAGATCGCAAGCCCATCTACAGCATTGATGAATCAGACGATGAAGCTGATATTTTGCCCGGAAAACACGAGCCAACTCAGGAAAAGTTTGAGAGGATAGTCAGAAGTGATACGAAAGAAAATTGCTGTCAAGCTTGTGAAGAAAATGGAGATCTTTTGAACTGTGTAACTTGCACTTATGCCTATCATCCTAGGTGTTTACTTCCACCACTTAGAGCTCCCGTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATCGATAAGATATTAGACTGTGAGATGCGCCCTACTGTAGCTGACGACAGTGATTCCACCAAACTGGGGTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATATCTCCATTGCACATGGGTGCCAGAGAAGGAGTTTCTGAAAGCTTACAAGACACATCATCGCCTAAAGACAAAAGTAAATAACTTCCATCGTCAAACGTCATCAGTTAATACTTCTGATGAAGACTTTGTTGCAATTCGACCTGAATGGACCACTATTGATCGGATTATCGCTTGCAGGGGTGATGATGATAAGGAATATCTTGTTAAATGGAGAGAGCTTTCTTATGATGAATGCTCTTGGGAATTCGAGTCTGATATTTCTGAGTTTCAGGCAGAAATTGAAAGATTCAACAGATTTCAGTCTAGGTCTGGGAAACTTATTATTTCAAATAAGCAGAAAGGCAGTGTTAGGGACGGTGCTGAATTGATGAGGCATCAGAAAGAATTTCATCAGTATGAACATAGTCCTGAATTTCTTTCAGGGGGCACTCTGCATCCATATCAACTTGAAGGCTTAAACTTTTTACGTTTCTCATGGTCTAAGCAAACTCACGTTATACTCGCCGATGAAATGGGACTTGGCAAAACCATACAGAGTATTGCTTTCTTGGCATCACTTTTTGAAGAGAACATTTCTCCACATTTGGTGGTTGCTCCACTTTCAACACTGCGAAACTGGGAACGTGAATTTGCAACATGGGCGCCACAAATGAATGTTGTTATGTATGTTGGATCTTCTCAAGCCCGCGCTGTTATACGTGAGTATGAATTTTACTTTCCGAAGAGCCAGAAGAAGTTTAAAAAAAAGAAGTCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTCTTGACATCATATGAGATGATCAACCTTGACACAACATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAACTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTTTTGACTGGGACTCCTCTGCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAATTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAGCAGATTTTAAGGCTTCACAAAATGTTGGCCCCCCATCTTCTTAGAAGGGTCAAGAAAGACGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCGAACAGAAAGAATATTATAAGGCTATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGAGCTCAGATTTCCCTTATCAATGTTGTTATGGAGTTGCGGAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGACATTCAAGATGCAAAAGAATCTTACAAAAAGCTGTTGGAATCATCGGGGAAGTTGCAATTGTTAGACAAAATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTATAAGAATTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGAATAGATCGGTTTAATGCGAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCGGACACAGTTATTATATACGATAGTGATTGGAACCCTCATGCTGATCTACAAGCTATGGCTAGGGCTCATCGACTTGGACAAACTAATAAGGTAATGATTTATAGGCTTGTAACACGGGGAAGCATTGAAGAAAGAATGATGCAGATGACTAAGAAGAAAATGGTGCTAGAACATCTTGTTGTAGGAAGGCTAAAATCTCAAAATATTAACCAGGAGGAGTTGGATGATATTATAAGGTATGGCTCCAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGGAAATCACGCCAGATTCATTATGATGCTGCTGCCATAGATAGATTGCTGGACCGTGAACAAGTTGGTGATGAAGAGGCTACAATGGATGATGATGAGGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCTGAAGAGGCAGCAAAAAAGAAAGCTATGGAGAACGAGTCTGCTGTGGCTAGTACAGAAAGAGCAAAATACTGGGAGGAGTTGTTAGGAGACAGATATGAAGTTCATAAAGTTCAAGAGTTGGATGCCTTGGGCAAAGGGAAGCGGAGTCGTCACAAGCAGATGGTCTCTGTTGAGGATGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGATGACAATGTTGATGCGGAGCTTACTGATGGTGATTCAAACTCAAATGGAACTATTTCTAAAAGACCTTACAAAAAGAGAGCCCGTGCAGATAGCACAGAGCCGCATCCTCTGATGGAAGGTGAAGGAAAATCATTTCGAGTGCTTGGTTTTAATCAGAATCAGAGAGCTGCATTTGTGCAAATTCTGATGAGGTTTGGGATGGGTGATTATGATTGGAAGGAGTTCACTTCTCGAATGAAACAGAAGACTTGTGAAGAAATCAAAGACTATGGAATCCTTTTCCTGAATCATATTATCGAAGATATAACTGATGCCTCTACATTCTCAGATGGCGTTCCAAAAGAAGGGCTTAGAATTCAAGATGTACTTGTGAGGATTGCAATTCTGGGCTTGATAAGGGAAAAAGTGAAGTTTGCATCAGAAAACCCCAGGACTCCACTTTTTTCAGCTGAAATCTTATTTCGCTATCCCAGTTTGAAGGGTGCAAAGTTTTGGAAGGAGGAGCATGATTTAGTGCTGCTGCGTGCTGTGTTGAAGCACGGATATGGAAGGTGGCAAGCTATTCTTGATGACAAGGATCTGAAGATTCATGAGATCATCTGTCAGGAGTTGAACCTTCCTCTTATAAATTTACCGGTACCGGGACAAGTAGGCTCTCAGGCACAAAATAGTGCAAATTTGTCCAACGCAGGAGCAGTTAGCAATCAATCTCAGGAAAATGAAGGGGGTGACAAAGCAGCTGATGGTGCACTTGGTTCTGGTGATGTTAGGAGCCAAACACTTTTATATCAAGATTCCTCCATGTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATTAAAAAGAGGGTGCTTCTCTTGGAAAAAGGAATCAATGCAGAGTACCAGAAAGAATGCTTAGGTGAAGTGAAAGTAAATGAAGTAGCAAGCAATGGACTTAATTGTGAAGAACCCAAGGCTACAAGTATGCCTGGTAATAAATCAGGGGAGACAGGCACCCAAATGTCTGATCAACTGCCTCAAGTGGAAGCAATAGCTTCAGACAAGATTTCTGTTGCTGATAGTGATCCAAATCGTTTGGAATTGATTCGGCTTTACAACGAGATGTGTGAAGTCATGGACGAAAACACCAATGCAGGAAAACGAGCAGAAGTTGACGTGAAGAACTTGCTGGCAATAGAGCCCATTTGTGATGACATCAATAGAATTTTAACACCCTTACATAAAAGTCACCCTTCTGAAGAAAAGCCGCTATTGATTCCAGAGAATAAATCAGAGGTTTCGCTGCAAAATGAAAATGTGGTTTCTCAAGATGGAAAACCTGCATCGGTGGGTGACGAGAGAACAGATCTGGTATTGGAGGGTCAACTTACAAAAGAAAACTGCACGGGTCCTGTCGAAGAGAAGGAAACACCTAGTCTTCTAGAAACAAGGGGAAGTGATATAGAAATGAATGAAGCTGAGAATGATGCCCAACTGAATGAAAAGAGAGAAAACAGCACAGGTCCTGTCGAAGAGAAGGAAACACGAAGTCTTTTAGAAACAAGGGGAAGTGATATAGAAATGAATGAATCTCGGAATGATTCTGAACTGAATGAAAAGAAAGAAAAGTCTGATCCACAGGTCATCTTGTTGGATGATTAA 4587 0.4101 MLANVAVQTHPPPSFLQFKVSISIYLPRPPIFNLILSLFRRIPGTLPPRSGGDWQFLHTAIMSSLVERLRARSDRKPIYSIDESDDEADILPGKHEPTQEKFERIVRSDTKENCCQACEENGDLLNCVTCTYAYHPRCLLPPLRAPVPDNWRCPECVSPLNDIDKILDCEMRPTVADDSDSTKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAYKTHHRLKTKVNNFHRQTSSVNTSDEDFVAIRPEWTTIDRIIACRGDDDKEYLVKWRELSYDECSWEFESDISEFQAEIERFNRFQSRSGKLIISNKQKGSVRDGAELMRHQKEFHQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREYEFYFPKSQKKFKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQILRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSEQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDAKESYKKLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKSQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDREQVGDEEATMDDDEDGFLKAFKVANFEYIDEVEAAAEEAAKKKAMENESAVASTERAKYWEELLGDRYEVHKVQELDALGKGKRSRHKQMVSVEDDDLAGLEDVSSDGDDNVDAELTDGDSNSNGTISKRPYKKRARADSTEPHPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGMGDYDWKEFTSRMKQKTCEEIKDYGILFLNHIIEDITDASTFSDGVPKEGLRIQDVLVRIAILGLIREKVKFASENPRTPLFSAEILFRYPSLKGAKFWKEEHDLVLLRAVLKHGYGRWQAILDDKDLKIHEIICQELNLPLINLPVPGQVGSQAQNSANLSNAGAVSNQSQENEGGDKAADGALGSGDVRSQTLLYQDSSMLYHFRDMQRRQVEFIKKRVLLLEKGINAEYQKECLGEVKVNEVASNGLNCEEPKATSMPGNKSGETGTQMSDQLPQVEAIASDKISVADSDPNRLELIRLYNEMCEVMDENTNAGKRAEVDVKNLLAIEPICDDINRILTPLHKSHPSEEKPLLIPENKSEVSLQNENVVSQDGKPASVGDERTDLVLEGQLTKENCTGPVEEKETPSLLETRGSDIEMNEAENDAQLNEKRENSTGPVEEKETRSLLETRGSDIEMNESRNDSELNEKKEKSDPQVILLDD 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0845 1528 ProSiteProfiles Zinc finger PHD-type profile. 112 159 IPR019787 -
Alju08g0845 1528 MobiDBLite consensus disorder prediction 1436 1528 - -
Alju08g0845 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 580 IPR027417 -
Alju08g0845 1528 Gene3D - 164 235 - -
Alju08g0845 1528 ProSiteProfiles Chromo and chromo shadow domain profile. 161 243 IPR000953 -
Alju08g0845 1528 SMART chromo_7 160 223 IPR000953 -
Alju08g0845 1528 SMART chromo_7 251 304 IPR000953 -
Alju08g0845 1528 MobiDBLite consensus disorder prediction 950 1016 - -
Alju08g0845 1528 Pfam Helicase conserved C-terminal domain 670 783 IPR001650 -
Alju08g0845 1528 SMART PHD_3 114 157 IPR001965 -
Alju08g0845 1528 SMART ultradead3 343 556 IPR014001 -
Alju08g0845 1528 CDD CD1_tandem 159 233 - -
Alju08g0845 1528 Gene3D - 339 589 IPR038718 -
Alju08g0845 1528 Pfam CHD subfamily II, SANT-like domain 997 1127 IPR009462 GO:0003677|GO:0006338
Alju08g0845 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 839 IPR027417 -
Alju08g0845 1528 Coils Coil 550 570 - -
Alju08g0845 1528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 163 IPR013083 -
Alju08g0845 1528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 673 834 IPR001650 -
Alju08g0845 1528 Gene3D - 1098 1268 - -
Alju08g0845 1528 MobiDBLite consensus disorder prediction 1001 1016 - -
Alju08g0845 1528 Gene3D - 590 814 IPR027417 -
Alju08g0845 1528 ProSitePatterns Zinc finger PHD-type signature. 115 156 IPR019786 -
Alju08g0845 1528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 359 545 IPR014001 -
Alju08g0845 1528 Pfam SNF2-related domain 366 647 IPR000330 GO:0005524|GO:0140658
Alju08g0845 1528 MobiDBLite consensus disorder prediction 1296 1315 - -
Alju08g0845 1528 MobiDBLite consensus disorder prediction 1205 1220 - -
Alju08g0845 1528 Coils Coil 898 918 - -
Alju08g0845 1528 Gene3D - 241 301 - -
Alju08g0845 1528 SMART DUF1087_2 903 969 IPR009463 -
Alju08g0845 1528 MobiDBLite consensus disorder prediction 1205 1230 - -
Alju08g0845 1528 MobiDBLite consensus disorder prediction 950 964 - -
Alju08g0845 1528 MobiDBLite consensus disorder prediction 1444 1528 - -
Alju08g0845 1528 ProSiteProfiles Chromo and chromo shadow domain profile. 253 301 IPR000953 -
Alju08g0845 1528 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 85 1483 - -
Alju08g0845 1528 CDD CD2_tandem 251 301 - -
Alju08g0845 1528 SMART DUF1086_2 975 1131 IPR009462 GO:0003677|GO:0006338
Alju08g0845 1528 Pfam CHD subfamily II, DUF1087 904 966 IPR009463 -
Alju08g0845 1528 SUPERFAMILY Chromo domain-like 238 302 IPR016197 -
Alju08g0845 1528 SUPERFAMILY Chromo domain-like 127 237 IPR016197 -
Alju08g0845 1528 CDD SF2_C_SNF 668 794 - -
Alju08g0845 1528 MobiDBLite consensus disorder prediction 965 985 - -
Alju08g0845 1528 SMART helicmild6 699 783 IPR001650 -
Alju08g0845 1528 Pfam Chromo (CHRromatin Organisation MOdifier) domain 164 217 IPR023780 -
Alju08g0845 1528 Pfam Chromo (CHRromatin Organisation MOdifier) domain 254 301 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0845 Alju-ChrAlju08 6362158 6391445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0845 369 844 RAD5 or RAD16-like Gene Family AT1G02670 22.662 5.07e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju08g0845 SNF2_N 1.1e-65 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2163 07 47746156 47763046 Alju08g0845 08 6362158 6391445 CCT