Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0843 ATGACGGCGGAGACCGGAATGGATAATACCGAAGACCAGTTTCCGGTAGGAATGCGTGTTCTTGCCGTTGACGATGACCCAACTTGCCTTTTCGTGTTGGGGGCTCTTCTTCGAAGATGCCAATATAACGTCACGACAACTAATCAGGCAATAGCAGCATTGGAGTTGTTGAGAGAAAACAGAAACAAGTTTGACCTAGTTATCAGTGATGTTCATATGCCAGACATGGATGGATTTAAGCTACTTGAGCATGTAGGACTTGAGATGGACTTACCAGTCATAATGTTGTCTGCACATGGTGACCCAAAACTAGTGATGAGGGGAATTACCCATGGAGCATGTGATTATCTGCTGAAACCTGTTCGAATGGAAGAGCTAAAGAACATTTGGCAGCATGTCATCAGGAGGAGGAAGTTTGATTCTAAGGAGCAGAATAAACCCAACAACCAGGACAAGCAGCCTCTTGCAGGTAGCGGCTGTGGTCCAGGGTCAGCAGGAACAAGCAACACAGATCAAAAGATGACCAAGAAAAGGAAGGATCAGAATGATGAAGATGATGAGCATGAGGAGGACCCGTCGACCCAGAAGAAGCCTCGGGTTGTCTGGACAGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAAGCTGTACCTAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACTAGGGAGAATGTGGCTAGCCATCTCCAGAAATATAGGCTTTATCTGAAAAGAATCAGTTGTGTGGCCAACCAACAGGCTAGTCTGGTGGCAGCCTTAGGTACTGCAGATCAATCCTATTGGAGAATGGGTTCCATGAGTGGTCTCAGCAATTTGCATACATTGAGTGCTCCTAGACAGTTTCAGAACACTGTTTTCAGACCCCTCCCATCTAGTGAGGTGATTGGTAGATTGAACACTCCTTCTGGCCTGGGTGTGCATGGACTGCCTTCTTCAAGAAATATTCAGTTTGGTTGTGCACAGAATTTAAACAATTCTATGAATGATCCACTCAAGTTCCAGTCAACCATTGTTCATGCAAACCAAAATGGCAATTCAGTTCTGGGAATAACAGGTTATACTGAGCGTGATCAATTACAACACCATAAGCATAAAAGCATTAGTTCTGTTCAAGACATGGCGAATGCTAGCTGCTCACACACGTCACTTCCAAGTGTAAGAAACAACTCCTTTATGTTAGCAACACGTCCTCAAAACACGCAAGGGGGAGGAGCAAATGAGAATTTATCTTCAATAGATTCTCAACCTTCAGAAACTTCTTGCTCTTTGCTGGATCATGGTAGTTGTGGTGATAATTGGTCCGATGGCGTGCAGCCAACTCAAATCCTGCCCAGTTCTTATCCACCAACTGGGTTTCCTAGACAAATGGCTGTATCTCCAACACAGAACTTGACTTCTACACCCTTGCGTGTTGGGAATCCAAGTGGTTCTTCATCCATCACTTTAATGTACAGTCAATCCCATGATGCAACAGCAAACGCAAATTCCCAAGGAGACATTTTTGCTAATTCCTCTGGGCGAATAAGCTGTAATGTACCATTTCAAGGGTGGGAAGACCGAAATCAGGATGCTGCTTACCGTTCAAATGTTATGTGTAGCTCTCTAAACTCTCTGATTCCTGTAAATAGTGGTGTTAGTGAATCAGCTAGTCCTTCTCCAACAGACCCAGCCTTCTACAGGAACTTGAACTTCAATTGTGGTAATCCCATACAAACCAAGCATGATGGGTTTGCAAAACTAGCTGAAGAGATCCCGTTGAGACAAGATCAAGGGTATATCATACACCAGCAGATGGCACAACAGAGTCGCATCTCTAACAATCTTGGTTCACTGGATGACTTCGTCGGTTCACTGATGAAACAGGATGAAGACAAGTTGAAATTATTGGATGGAGACTTAATGTGTAATAATTACACTGTGGGGACATCGATGTGA 1983 0.4397 MTAETGMDNTEDQFPVGMRVLAVDDDPTCLFVLGALLRRCQYNVTTTNQAIAALELLRENRNKFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAHGDPKLVMRGITHGACDYLLKPVRMEELKNIWQHVIRRRKFDSKEQNKPNNQDKQPLAGSGCGPGSAGTSNTDQKMTKKRKDQNDEDDEHEEDPSTQKKPRVVWTVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQASLVAALGTADQSYWRMGSMSGLSNLHTLSAPRQFQNTVFRPLPSSEVIGRLNTPSGLGVHGLPSSRNIQFGCAQNLNNSMNDPLKFQSTIVHANQNGNSVLGITGYTERDQLQHHKHKSISSVQDMANASCSHTSLPSVRNNSFMLATRPQNTQGGGANENLSSIDSQPSETSCSLLDHGSCGDNWSDGVQPTQILPSSYPPTGFPRQMAVSPTQNLTSTPLRVGNPSGSSSITLMYSQSHDATANANSQGDIFANSSGRISCNVPFQGWEDRNQDAAYRSNVMCSSLNSLIPVNSGVSESASPSPTDPAFYRNLNFNCGNPIQTKHDGFAKLAEEIPLRQDQGYIIHQQMAQQSRISNNLGSLDDFVGSLMKQDEDKLKLLDGDLMCNNYTVGTSM 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0843 660 Gene3D - 17 154 - -
Alju08g0843 660 SMART REC_2 18 130 IPR001789 GO:0000160
Alju08g0843 660 CDD REC_typeB_ARR-like 20 134 - -
Alju08g0843 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Alju08g0843 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 376 IPR045279 GO:0009736
Alju08g0843 660 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Alju08g0843 660 Gene3D - 193 256 - -
Alju08g0843 660 MobiDBLite consensus disorder prediction 414 439 - -
Alju08g0843 660 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Alju08g0843 660 PIRSF RR_ARR_type-B 1 658 IPR017053 GO:0003677|GO:0003700|GO:0009736
Alju08g0843 660 MobiDBLite consensus disorder prediction 140 198 - -
Alju08g0843 660 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Alju08g0843 660 FunFam Two-component response regulator 193 256 - -
Alju08g0843 660 MobiDBLite consensus disorder prediction 172 198 - -
Alju08g0843 660 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Alju08g0843 660 SUPERFAMILY CheY-like 17 142 IPR011006 -
Alju08g0843 660 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0843 Alju-ChrAlju08 6348893 6352621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0843 1 649 Response Regulator Gene Family AT2G25180 43.834 1.05e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju08g0843 Response_reg 4e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2164 07 47764556 47767588 Alju08g0843 08 6348893 6352621 CCT
Alju08g0843 08 6348893 6352621 Alju08g0843 08 6348893 6352621 ECH