Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0837 ATGTATGATCAATTTCCAGACACTGTTCCTCCACCAAAAAACCCTCAGCAAATGAGAAATCAAGCCAAAGTGTTGGCCTTCGCCAATCGAACTCAACTACAAAAACCCTCCTCTCCTCTTCCTTCTGGTGTTGGAACAAAAACACACACTCAAACATTTACACAAACACTTTGCGAACAAAAACACGTTTCCATTTTTTTCCCAAGCATGGCCAGACCACAACAGAGATATCGAGGCGTCCGACAAAGGCATTGGGGATCTTGGGTCTCTGAAATTCGACACCCTCTATTGAAGACGAGGATATGGCTTGGTACATTTGAAACTGCAGAAGATGCAGCCAGAGCTTACGATGAAGCAGCGAGGCTGATGTGTGGTCCAAGAGCAAGAACCAATTTCCCTTACAACCCCAATGCGTCTCAATCATCATCTTCTAAGCTTCTCTCTGCAACTCTCACTGCTAAACTACATAGATGTTATATGGCTTCGCTTCAAATGACCAGACCCACGGTACCCGAACCTGTGCGAGCAACTTCTTCTCCAAATGTTGTGTCCACGAGCACAAGCAACTCGTCCTATGTGAAAAGCAGAGGGACCAATATTACAATGTTGGGAGAGAAGAAAGCAAAGGAGGAAGAGGCTGAAGAATCAGAGGCAAAGTGGGGTGTGAAGAAGGTGAAGGTGGAAAGTGGTGAGCAATTCAAGCCTCTTGAAGAGGTTCATATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGGTCTATTGAGCTCTGCTCTGCCATGCCACCTCAGTAA 792 0.4545 MYDQFPDTVPPPKNPQQMRNQAKVLAFANRTQLQKPSSPLPSGVGTKTHTQTFTQTLCEQKHVSIFFPSMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPTVPEPVRATSSPNVVSTSTSNSSYVKSRGTNITMLGEKKAKEEEAEESEAKWGVKKVKVESGEQFKPLEEVHIEQMIEELLDYGSIELCSAMPPQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0837 263 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Alju08g0837 263 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Alju08g0837 263 CDD AP2 75 135 IPR001471 GO:0003700|GO:0006355
Alju08g0837 263 MobiDBLite consensus disorder prediction 171 194 - -
Alju08g0837 263 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Alju08g0837 263 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Alju08g0837 263 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 61 209 - -
Alju08g0837 263 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Alju08g0837 263 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Alju08g0837 263 Gene3D AP2/ERF domain 75 134 IPR036955 GO:0003700|GO:0006355
Alju08g0837 263 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0837 Alju-ChrAlju08 6302245 6305179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0837 70 263 AP2-EREBP Transcription Factor Family AT5G25190 65.306 2.15e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju08g0837 AP2 1.4e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2172 07 47846523 47847190 Alju08g0837 08 6302245 6305179 CCT
Alju08g0837 08 6302245 6305179 Alju08g0837 08 6302245 6305179 ECH