Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0832 ATGGCCTCCCATAATCAACCACACCTCTCCCCCCACCATTTCTCCGACTCCGATCACCCCCTCCTCCATTCCAACTATTCCCACCACTCTCACTCTCACTCTCACAACAATTTCCTCAACCTCCACTCTACCGCCCCCTCCGACTCTGCCGGAGCTGCTCCCCACCGCCCGATCCTCCGCCCTGACCACACTCACGTCATCGACGACGTCGCTGCCGCCTTGTCCCACGACTCCGCTGATTTGAATATGGCTTCGGGCGACAACCCCAATGCGAAGAGCGAGATGGGTGTGGAGGATGCGAGGTCCAAGGCGGAGATTCTAGCGCATCCGCTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGTTTGCGGATCGCCACGCCGGTTGACCAGTTGCCCAGGATTGACGCTCAACTAGCTCAGTCCCAGAATGTGGTGGCCAAGTACTCTGCTTTGGGACATGGAGCTCATAGCATGGTTGCCGATGAGAAGGGACTCGATCAGTTCATGTCCCATTATGTTTTATTGCTCTGCTCCTTCAAAGAACAACTTCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTCATGGCATGTTGGGAGATAGAACAGTCTTTACAAAGTTTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCTACCATGTCTGATGACGAAGAAGACCAAATAAATAGTGATGGCAATATTTTTGATGGTGCTTTTGATGGTTCAGACAGCATGGGATTTGGCCCTCTTGTTCCAACCGAGAATGAAAGATCGCTCATGGAGCGAGTTAGGCAAGAGTTGAGACATGAACTGAAACAGGGCTATAAGGATAAAATTGTGGATATAAGAGAAGAAATTTTAAGGAAGAGACGAGCTGGGAAACTTCCTGGTGATACCACCTCTGTCCTTAAAGCTTGGTGGCAAGCCCATTCCAAGTGGCCTTACCCTACTGAGGAAGACAAGGCAAAGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTCATCAATCAAAGGAAGAGGAACTGGAACAGCAATGCTTCAACTTCTACAGTCTCTAAGAGCAAGCGGAAGAGGTGA 1098 0.5018 MASHNQPHLSPHHFSDSDHPLLHSNYSHHSHSHSHNNFLNLHSTAPSDSAGAAPHRPILRPDHTHVIDDVAAALSHDSADLNMASGDNPNAKSEMGVEDARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGAHSMVADEKGLDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQINSDGNIFDGAFDGSDSMGFGPLVPTENERSLMERVRQELRHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQAHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSNASTSTVSKSKRKR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0832 365 SMART KNOX2_2 155 211 IPR005541 GO:0003677|GO:0005634
Alju08g0832 365 SMART HOX_1 290 355 IPR001356 GO:0003677
Alju08g0832 365 FunFam homeobox protein knotted-1-like 3 isoform X1 289 350 - -
Alju08g0832 365 Pfam KNOX2 domain 160 210 IPR005541 GO:0003677|GO:0005634
Alju08g0832 365 SMART ELK_2 268 289 IPR005539 GO:0003677
Alju08g0832 365 CDD homeodomain 291 352 IPR001356 GO:0003677
Alju08g0832 365 Gene3D - 287 362 - -
Alju08g0832 365 SUPERFAMILY Homeodomain-like 290 353 IPR009057 -
Alju08g0832 365 ProSiteProfiles ELK domain profile. 268 288 IPR005539 GO:0003677
Alju08g0832 365 Pfam KNOX1 domain 103 143 IPR005540 GO:0003677|GO:0005634
Alju08g0832 365 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677
Alju08g0832 365 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 354 - -
Alju08g0832 365 SMART KNOX1_2 100 144 IPR005540 GO:0003677|GO:0005634
Alju08g0832 365 MobiDBLite consensus disorder prediction 11 25 - -
Alju08g0832 365 MobiDBLite consensus disorder prediction 31 47 - -
Alju08g0832 365 Pfam ELK domain 268 289 IPR005539 GO:0003677
Alju08g0832 365 MobiDBLite consensus disorder prediction 1 60 - -
Alju08g0832 365 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0832 Alju-ChrAlju08 6251366 6254096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0832 67 365 Homeobox Transcription Factor Family AT5G25220 78.502 4.45e-174 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju08g0832 KNOX2 3.5e-19 No_clan