Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0798 ATGGTACAATCAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTCTTCTAAAGAGAAGGGTGTGGCTAGGGACATTTGAGACGGCGGAGGCAGCGGCGAGGGCATATGATCAAGCAGCCATTTTGATGAATGGAAGGAACGCGAAGACGAATTTCCCGGCACCAATGAATGAAGGTGAAGAAGGAGGAGGGTCTTTCTTGTCTCCCAAGGCACTATCAGAGCTGTTATCCACAAAGCTTAAGAAATGCTGCAAGGACACGTCTCCTTCTTCCCTCACTTGTCTCAGGCTTGATTCGGATAATTCTCACATTGGTGTGTGGCAAAAGAGATCTGGACCTCGCTCTGGTTCCAATTGGGTCATCAGGGTTGAGCTTGGCAAGAAACAACAACAAGCACAACAAAATGATGATAAAACTTCTTCTGCAGACGCTATTAGCAGTAGTGAAGCTGCAAGCGAGGTTGAAGATGAAGAGGCAATGCAGATGATTGATGAGCTTCTTAATTGGAACTATCCTTTTGATTCTTCCTCCGCTACGCCTCAACAAGAACAAAGATAA 588 0.4694 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPAPMNEGEEGGGSFLSPKALSELLSTKLKKCCKDTSPSSLTCLRLDSDNSHIGVWQKRSGPRSGSNWVIRVELGKKQQQAQQNDDKTSSADAISSSEAASEVEDEEAMQMIDELLNWNYPFDSSSATPQQEQR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0798 195 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Alju08g0798 195 MobiDBLite consensus disorder prediction 137 167 - -
Alju08g0798 195 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Alju08g0798 195 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Alju08g0798 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 159 - -
Alju08g0798 195 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Alju08g0798 195 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Alju08g0798 195 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Alju08g0798 195 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Alju08g0798 195 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Alju08g0798 195 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Alju08g0798 195 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0798 Alju-ChrAlju08 6007434 6008121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0798 1 188 AP2-EREBP Transcription Factor Family AT5G25390 61.780 1.00e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju08g0798 AP2 1.9e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0798 08 6007434 6008121 Alju08g0798 08 6007434 6008121 ECH
Alju13g1250 13 31260721 31261712 Alju08g0798 08 6007434 6008121 ECH