Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0797 ATGAACATGGGCTCTCAGAATCGACAACTGGGCCTTGGGCATCATTGTCCGTGTAGCTGCCCGGTTGTCTACGCTCTTGAAGAGGTTCCCCTATCTGAAGCTTCTTTTACCCCAATTGTGTTTCAGCTAACAAATTTCATTTGCAGACCCTTTGAACCACAAACTAGTCTTCTCTTTCAACTCTTCGCGCAGAATATGGGAGAAACCAAGGATGAAGGATACGAGGAAGAGCTCCTTGACTATGAAGAGGAAGAAGACAAAGCCCCTGATTCTGTTGGAACCAAAGTCAACGGTGAAGCTGGAAAGAAGGGCTACGTTGGGATTCACAGTTCGGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGTGCCATTGTAGACTCTGGATTTGAGCATCCTTCTGAAGTACAACATGAATGCATTCCTCAAGCAATCCTGGGCATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCGACCTTGCAGCAGATTGATCCCGTTGCAGGCCAAGTTGCTGCCCTTGTCCTATGTCATACAAGGGAATTGGCATACCAGATATGCCATGAGTTCGAGAGGTTCAGTACCTACTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAGTGCCCTCATATTGTCGTTGGAACACCTGGAAGAATACTAGCATTGGCTAGGGATAAGGATCTTTCATTAAAGAATGTCAGGCATTTTATCTTGGATGAGTGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATCTTCAAGATGACTCCTCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTCGATGACGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAAGAAAAGAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTCAATCAAGTTGTTATCTTTGTGAAGAGTGTCAGTAGAGCAGCTGAGCTTGACAGACTACTCGTGGAGTGCAACTTCCCATCTATATGCATCCACTCTGGCATGTCACAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTTAAGGAGGGCCATAGCAGGATTCTTGTGGCAACTGACTTGGTTGGGAGAGGGATTGACATTGAACGCGTTAACATTGTAATAAACTATGACATGCCTGATTCTGCTGACACCTACTTGCACAGGGTTGGCAGAGCTGGAAGGTTTGGCACCAAAGGTCTTGCAATTACATTTGTTTCATGTGCTGCTGATGTTGATGTTCTTAACAATGTTCAGTCGAGATTTGAAGTTGATATAAAGCAGCTTCCAGAGCAGATTGATACCTCTACATACATGCCATCATAG 1479 0.4381 MNMGSQNRQLGLGHHCPCSCPVVYALEEVPLSEASFTPIVFQLTNFICRPFEPQTSLLFQLFAQNMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLVECNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0797 492 FunFam DEAD-box ATP-dependent RNA helicase 324 492 - -
Alju08g0797 492 Pfam Helicase conserved C-terminal domain 341 448 IPR001650 -
Alju08g0797 492 CDD DEADc_DDX39 110 317 - -
Alju08g0797 492 FunFam DEAD-box ATP-dependent RNA helicase 56-like 99 317 - -
Alju08g0797 492 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Alju08g0797 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 459 IPR027417 -
Alju08g0797 492 CDD SF2_C_DEAD 328 457 - -
Alju08g0797 492 Gene3D - 324 491 IPR027417 -
Alju08g0797 492 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 109 466 - -
Alju08g0797 492 Gene3D - 107 323 IPR027417 -
Alju08g0797 492 SMART helicmild6 367 448 IPR001650 -
Alju08g0797 492 SMART ultradead3 130 331 IPR014001 -
Alju08g0797 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 315 IPR014001 -
Alju08g0797 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 488 IPR001650 -
Alju08g0797 492 Pfam DEAD/DEAH box helicase 136 301 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0797 Alju-ChrAlju08 5997251 6001945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0797 66 492 Eukaryotic Initiation Factors Gene Family AT5G11200 83.369 0.0 755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2233 07 48302467 48310147 Alju08g0797 08 5997251 6001945 CCT
Alju08g0797 08 5997251 6001945 Alju08g0797 08 5997251 6001945 ECH
Alju08g0797 08 5997251 6001945 Alju07g2233 07 48302467 48310147 ECH