LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju08g0786	ATGCAGGAGCAAGCTACAAGTTCTATTGCCGCTAGCTCTCTGCCTTCGAGTAGTGAAAAATCTTCAAGTTCTGCCCTCCAAGTTGAAGTAAAAGAAGGCATTGAGAGTGACGAGGAGATCAGACGGGTGCCGGAGATCGCCGGACCGTCAGCATCTCGTCCAGACTCCGGTTCAGGTGCTGCTACAGACCGGGTTCAAGGGGCAGGGGAGGGCCAAAGGAAGAGAGGGAGAAACTCAGCTGACAAAGAAAGCAAGCGGCTAAAGAGGCTTTTGAGGAACAGAGTTTCGGCGCAGCAAGCCAGGGAGAGGAAGAAGGCATACTTGATTGATTTGGAAACTAGGGTTAAAGACTTGGAGAAGAAGAATTCTGAGTTGGAAGAGAGGCTGTCCACTTTACAGAACGAGAATCAGATGCTAAGACATATACTGAAGAACACAACAGCAAGCAGGAGAGGAGGCACTGGCGCTGAAGGAACAATGTGA	483	0.501	MQEQATSSIAASSLPSSSEKSSSSALQVEVKEGIESDEEIRRVPEIAGPSASRPDSGSGAATDRVQGAGEGQRKRGRNSADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELEERLSTLQNENQMLRHILKNTTASRRGGTGAEGTM	160

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju08g0786	160	FunFam	Transcription factor HY5	104	145	-	-
	Alju08g0786	160	Pfam	bZIP transcription factor	82	142	IPR004827	GO:0003700\|GO:0006355
	Alju08g0786	160	MobiDBLite	consensus disorder prediction	1	29	-	-
	Alju08g0786	160	SUPERFAMILY	Leucine zipper domain	85	143	IPR046347	GO:0003700\|GO:0006355
	Alju08g0786	160	CDD	bZIP_HY5-like	86	137	-	-
	Alju08g0786	160	Coils	Coil	80	142	-	-
	Alju08g0786	160	Gene3D	Single helix bin	104	145	-	-
	Alju08g0786	160	MobiDBLite	consensus disorder prediction	68	102	-	-
	Alju08g0786	160	SMART	brlzneu	81	145	IPR004827	GO:0003700\|GO:0006355
	Alju08g0786	160	MobiDBLite	consensus disorder prediction	1	102	-	-
	Alju08g0786	160	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	4	153	IPR044280	GO:0000981\|GO:0045944
	Alju08g0786	160	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	88	103	IPR004827	GO:0003700\|GO:0006355
	Alju08g0786	160	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	83	146	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju08g0786	Alju-ChrAlju08	5931294	5933412	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju08g0786	1	142	bZIP Transcription Factor Family	AT5G11260	76.190	3.64e-56	172

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Alju08g0786		bZIP_1	3.2e-14	CL0018