Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0767 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTATATCCATGACTACCTGGTTAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCTTCGGATCCTGTTGCTATTGATGCCCCTGGAGGATTTCTGTTCGAGTGGTGGTCGGTATTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTTGCGGCATCTTATATTGAGACGCAGTTAATCAAGGCAAGGGAACAACAGCAGCAGCAACAGCCTCAGCAACAGGCGCAGCCTCAATCTCAGCAATCACAACATCAGCAACAACAGCAGCAGCACATGCAGATGCAGCAATTCCTGTTACAGCGGCATGCACAGCAGCAGCAGCAACAGCAGCAGCAGCCGCCGCCGCCACAACCTCCACAGCAGCAGCAGCCACCTGCGCAACAGCAGCAGAGAAGGGATGGGGCTCATCTCTTAAATGGCAGTGCAAATGGATTAGTTGGAAACCCTAGCACTGCAAATGCCATGGCCACAAAGATGTATGAAGAGAGGTTAAAACCTCCCCTTCAGAGGGATTCTTTGGACGATGCAGCCATGAAGCAAAGATTTGGTGACAACATGAGCCAACTCTTGGACCCTAATCATGCCTCGATAATGAAGTCAGCTGCAGCTTCTGGCCAGTCTTCAGGACAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTGCCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGCTGCAGGTCCTGAAGGATCATTAATGGGAATTCCTGGATCAAATCAAGGCAGCAACAATTTGACTCTGAAAGGATGGCCACTCACAGACTTGGAACAACTGCGCTCTGGTATTCTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCCCTTCATCAACTACAAATGTTGACACCTCACCATCAACAGCAGTTTATGCTTGCGCAGCAAAATTTGTCATCCCCATCTGCCAGTGAGGAGAATAGAAAACTGAGAATGCTACTGAGTCAAAGGAATATGGGCGTAAATAAGGATGGCCTTTCAAATTCTGTTGACGTGGTTCCAAATATTGGATCACCTCTCCAAGCTGGTGGCCCTCTTTTGCCTCGTGATACTGATATGCTAATGAAGTTAAAATTGGCTCATCAAATACATCAACAGCAGCAGCAGCAAAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTCTATCAAATCAGCAGCCTCAGACTTCAAACCATAATATGCATCAGCTAGATAAAGTGGGCGGCGGCGGCAGCGTCACCATGGATGGAAGCATGTCTAACTCCTTCAGAGGAAACGATCAAGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCAAATAGTTCTGGAACAACAAATACAGCAGGTCCATCTCCAAGTTCTGCACCATCAACTCCCTCAACTCATACGCCTGGAGATGTGATATCCATGCCTGCTTTGCCTCATAGTGGCAGTTCTTCGAAGCCTTTAATCATGTTTAGCACTGATGGTACTGGAACTCTCACATCGCCATCAAACCAGTTGGTTGATATGGATCGTTTTGTGGAGGATGGATCACTCGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCGCTTTCACATTTTCTGAAGTAAATTCTGTACAAGCAAGCACAAACAAAGTTGTTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCAAGCGGTGGTCATGACAAGAAGGCTGTGTTATGGCACACAGATTCATTAAAGCAAAAGGCCACTCTAGAAGAACATTCTTCTATGATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGATAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACAATTCGCACCTTTACAGGACATTCTGCACATGTTATGTCATTAGATTTTCACCCAAATAAGGATGATCTGATCTGCTCCTGTGATGGTGATGGTGAGATACGATATTGGGGTATAACCAATGGTAGCTGTACCAGAGTCTCGAAGGGCGGCACTGCCCAAATGAGATTTCAACCTCGTATGGGGAGGTACCTTGCTGCAGCTTCAGAGAATGTTGTCTCTGTATTTGATGTGGAGACACATACATGCAGATATTCATTACAGGGACATACAAAGGCAATACATTCTGTTTGCTGGGACCCTACTGGGGAATTATTGGCATCTGTGAGTGAGGACTCAGTCAGGGTTTGGACTCTTGGGGCAGGAAGTGAAGGAGAATGTGTTCACGAGCTAAGCTGTAACGGCCATAAGTTCCACTCCTGTGTTTTCCACCCAACTTATTCTAACTTGCTTGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAATATAGCGGAGAACAAGACAATGACTGTGTCTGCCCATGAAGGTCTCATTGCTGCATTGGCAGTGTCTCCGGTGACTGGTTTGGTTGCTTCAGCTAGCCATGACAAGTTCGTCAAGCTCTGGAAATAA 2661 0.457 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQQQAQPQSQQSQHQQQQQQHMQMQQFLLQRHAQQQQQQQQQPPPPQPPQQQQPPAQQQQRRDGAHLLNGSANGLVGNPSTANAMATKMYEERLKPPLQRDSLDDAAMKQRFGDNMSQLLDPNHASIMKSAAASGQSSGQVLHGAAGGMSQQVQARSQQLPGSTPDIKSEINPVLNSRAAGPEGSLMGIPGSNQGSNNLTLKGWPLTDLEQLRSGILHQQKPFIQAPQPLHQLQMLTPHHQQQFMLAQQNLSSPSASEENRKLRMLLSQRNMGVNKDGLSNSVDVVPNIGSPLQAGGPLLPRDTDMLMKLKLAHQIHQQQQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKVGGGGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTTNTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLIMFSTDGTGTLTSPSNQLVDMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGAFTFSEVNSVQASTNKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSAHVMSLDFHPNKDDLICSCDGDGEIRYWGITNGSCTRVSKGGTAQMRFQPRMGRYLAAASENVVSVFDVETHTCRYSLQGHTKAIHSVCWDPTGELLASVSEDSVRVWTLGAGSEGECVHELSCNGHKFHSCVFHPTYSNLLVIGCYQSLELWNIAENKTMTVSAHEGLIAALAVSPVTGLVASASHDKFVKLWK 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0767 886 MobiDBLite consensus disorder prediction 89 157 - -
Alju08g0767 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 725 - -
Alju08g0767 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 644 679 - -
Alju08g0767 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 769 801 IPR001680 GO:0005515
Alju08g0767 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 643 IPR001680 GO:0005515
Alju08g0767 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 854 886 IPR001680 GO:0005515
Alju08g0767 886 MobiDBLite consensus disorder prediction 456 516 - -
Alju08g0767 886 ProSitePatterns Trp-Asp (WD) repeats signature. 663 677 IPR019775 -
Alju08g0767 886 MobiDBLite consensus disorder prediction 407 534 - -
Alju08g0767 886 SMART Lish 8 40 IPR006594 GO:0005515
Alju08g0767 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 679 IPR001680 GO:0005515
Alju08g0767 886 SMART WD40_4 723 759 IPR001680 GO:0005515
Alju08g0767 886 SMART WD40_4 762 800 IPR001680 GO:0005515
Alju08g0767 886 SMART WD40_4 680 720 IPR001680 GO:0005515
Alju08g0767 886 SMART WD40_4 806 845 IPR001680 GO:0005515
Alju08g0767 886 SMART WD40_4 847 886 IPR001680 GO:0005515
Alju08g0767 886 SMART WD40_4 595 634 IPR001680 GO:0005515
Alju08g0767 886 SMART WD40_4 637 676 IPR001680 GO:0005515
Alju08g0767 886 MobiDBLite consensus disorder prediction 89 134 - -
Alju08g0767 886 CDD WD40 598 886 - -
Alju08g0767 886 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 886 - -
Alju08g0767 886 Gene3D - 577 736 IPR015943 GO:0005515
Alju08g0767 886 SUPERFAMILY WD40 repeat-like 596 886 IPR036322 GO:0005515
Alju08g0767 886 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Alju08g0767 886 Pfam LisH 10 36 IPR006594 GO:0005515
Alju08g0767 886 Pfam WD domain, G-beta repeat 641 676 IPR001680 GO:0005515
Alju08g0767 886 Pfam WD domain, G-beta repeat 765 799 IPR001680 GO:0005515
Alju08g0767 886 Pfam WD domain, G-beta repeat 605 633 IPR001680 GO:0005515
Alju08g0767 886 Pfam WD domain, G-beta repeat 683 719 IPR001680 GO:0005515
Alju08g0767 886 Pfam WD domain, G-beta repeat 850 886 IPR001680 GO:0005515
Alju08g0767 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 854 886 - -
Alju08g0767 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 729 IPR001680 GO:0005515
Alju08g0767 886 FunFam Transcriptional corepressor LEUNIG 730 886 - -
Alju08g0767 886 MobiDBLite consensus disorder prediction 408 445 - -
Alju08g0767 886 Gene3D - 737 886 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0767 Alju-ChrAlju08 5758804 5772867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0767 681 885 Miscellaneous Gene Families AT5G08390 24.762 1.56e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Alju08g0767 WD40 0.055 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2263 07 48548518 48556396 Alju08g0767 08 5758804 5772867 CCT
Alju08g0767 08 5758804 5772867 Alju08g0767 08 5758804 5772867 ECH