Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0729 ATGCCAGGTTTGACATGTAATGCTTGCAACAAAGAATTCAGCGACGATGCTGAGCAAAAGCTTCATTACAAATCCGAATGGCACCGATACAATCTCAAGCGCAAGGTGGCTGGTGTTCCTGGGGTGACAGAAGCACTGTTCATGGCTAGGCAATCTGCAACTGCTCAAGAGAAAGATAAAAATGAAACTCCCATGCTCTATAGTTGTGGCCTTTGTGGAAAAAGTTATAAAAGTTCTAAGGCTCATGCCGAGCATCTCAAATCCCGTGGTCATTTGATGCGGGCATCTCAAGGAAGTAGTCATTCAGATGACCTGGCAATAGTCAAGCCACTACCACAACGTGTAGTGAATAGACCTCCTCCCAGAAGAGATGTAGACAATGATGAAAGTGAAGGAAGTGAAGATGAATGGGAGGAGGTCGATTCGGAGGATCCTTTGATTAACGAAGCTTCAACGTCCTTGACTGGTTTGAATGTGAATGAGCATGATGACAATGTTGATATGGACGAAGATGAGGATGATGATTATGGGGATTTCGATCCATCATGCTGTTTTATGTGTGATCAAAAGCATAATAGTATAGAAAGTTGTATTGTTCACCTGCACAAGCAGCATGGATTCTTCATTCCAGATGTCGAGTATTTAAAGGATCCTAAGGGCCTGCTTACCTATCTAGGCCTTAAGGTCATGAAGGATTATATGTGCCTTTACTGCAATGATAGATGCCATCCTTTCAGCAGCCTGGAAGCTGTTAGGAAACACATGGAAGCCAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGATGATGAAGAAGTGGAGTTGGAAGAGTTCTATGATTATAGCTGCAGTTATGTGGATGAGCAAGGGAAGCAACTAGTTGCATCAGGTGAGTCAGCCAGCAATGTAGAATTTGGCAGTGGTGGATCGGAGCTTGTAATCACAAAGAAATCCAATGATGGAATATCAACTAAAACACTTGGTTCTCGTGAATTCTTGCGTTATTATCGACAAAAACCCCGCCCATCACCCACAAATAACATGTCTGTTGCTGCCGCATTGGCCTCCAGGTACAGGAGCATGGGTTTGGCAACTGTGCAATCAAGGGAGCATATGGTGAGGCTGAAAGTGCTGAAGGAAATGAATAGGTCTGGTGTGGAAATCATGCGTTCTAAAATAGCCATGAAAAGTAACATCATCAGGAACTTGCCAAAGAATGTGCCATATTAG 1233 0.4331 MPGLTCNACNKEFSDDAEQKLHYKSEWHRYNLKRKVAGVPGVTEALFMARQSATAQEKDKNETPMLYSCGLCGKSYKSSKAHAEHLKSRGHLMRASQGSSHSDDLAIVKPLPQRVVNRPPPRRDVDNDESEGSEDEWEEVDSEDPLINEASTSLTGLNVNEHDDNVDMDEDEDDDYGDFDPSCCFMCDQKHNSIESCIVHLHKQHGFFIPDVEYLKDPKGLLTYLGLKVMKDYMCLYCNDRCHPFSSLEAVRKHMEAKSHCKVHYGDGDDDEEVELEEFYDYSCSYVDEQGKQLVASGESASNVEFGSGGSELVITKKSNDGISTKTLGSREFLRYYRQKPRPSPTNNMSVAAALASRYRSMGLATVQSREHMVRLKVLKEMNRSGVEIMRSKIAMKSNIIRNLPKNVPY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0729 410 MobiDBLite consensus disorder prediction 146 160 - -
Alju08g0729 410 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
Alju08g0729 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Alju08g0729 410 Gene3D Classic Zinc Finger 4 89 - -
Alju08g0729 410 MobiDBLite consensus disorder prediction 129 145 - -
Alju08g0729 410 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
Alju08g0729 410 SUPERFAMILY beta-beta-alpha zinc fingers 169 273 IPR036236 -
Alju08g0729 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 96 IPR013087 -
Alju08g0729 410 MobiDBLite consensus disorder prediction 83 173 - -
Alju08g0729 410 Pfam C2H2 type zinc-finger (2 copies) 184 283 IPR041661 -
Alju08g0729 410 PANTHER ZINC FINGER PROTEIN 622 2 409 IPR040025 -
Alju08g0729 410 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Alju08g0729 410 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Alju08g0729 410 SMART c2h2final6 4 28 IPR013087 -
Alju08g0729 410 SMART c2h2final6 67 91 IPR013087 -
Alju08g0729 410 SMART c2h2final6 233 260 IPR013087 -
Alju08g0729 410 SMART c2h2final6 182 205 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0729 Alju-ChrAlju08 5454747 5457105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0729 1 410 C2H2 Transcription Factor Family AT4G31420 64.819 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju08g0729 zf-C2H2_2 8.4e-24 CL0361