Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0720 ATGCCTCATGCATTCAGAAGTCCTCCTAATACTAAGGATCTAGGTGTTCAGTTGTGTAGCCGACCTAATTGCAGCAGCAAGATTTACTCTTCTATAATTGCTGAGAATGATTCATGCATGAAAGGTAAATCTTTGAGGTCTCCAACCCAATCCTGTTTAAGTGGAAAGGAAACAGTTGGAAGATCCTGTAGAACTTTTTCAGGAACTAGTAATCCAAGGAAATCCCTTAAAGAGCCTCAGCAACGAACACTACCCTTTAGGTTAGAGACAGATTCATCTGATACGAGCAGCATACAGGATGAACCTGAAGTTTCAGTTCGCATCCCTTCTTCGTCTGCAACTTATCAAAGTCAGCGTCAAGCTGAACAAGCACTAGTGGAAGTGGCAAGCACTAGTGGTGTTTCAAGAACAAGATCACGGAGAAGTTTTCATCAACCTGGATCGCGTGGTCAAGAAGCTAAAAGCACTAGCTCAGTGACACGTGCTGGTACCAGCCGATATAATTTGAGGAACATCAAGTGCAAATCAATAAATGATGTCAGCTCCACAGATTGTTCTTCTTCGGAATCAACCATTAATAGAAGGAAGGATATGGTGAAAAGAAGAAATTGTGAAAGGGAAAGTAGTTCTTCTGTCAGAGGACAGAATTCTAGTTCTGGAAGCAGTGGCATATCTATTTCTGGTCCAAGAAGATCAAGAAATATTCACCCTCACACGGACAACATTGCATCGGTTAGAACTCGAAGGACTATGAGTAGTAGTGCTAGGGAAAGGATTCCAAGCCGTGGAAATGCACGCCCTATGCGGCCCAATGAATCCCTTGCTTTGTTGCCACCTATGCCTCGTGAACTTTCTTTTCCACGTCATGTTTCTGCGGAGTCTCCTTTAATTCAATTGAGCTTCCCTAGTAGACCAGGGTCAAGCAACGGGCGGCCTTCATCTCCTTCAGAATCTGACACCACTCGTCCTCTAACAAATCGGAGTAGAAGACGGTACCAAAACAGTATTGCTGAGGTATTATTAGAACTCGAGAGGATTGAACAAGATGAAGATCTGACAGAGGAGGAAATTCATTTATTAGAGACGAATTTCCTCCTTAACGGACTATACTTGTATGATCAGCATAGAGACATGCGTATGGATATTGATAATATGTCATATGAGGAACTATTAGCCCTGGAAGAAAGGATGGGTACTGTGAGCACAGCTTTAACAGAGGAAGCACTGTCAGAATGTCTTAAGAGAAGCATCTTTCAGCCTACACCTTCAGATGACGATGACGGCAAGATTAACATAAATACCATTAATGATGATATCAAATGCAGCATCTGCCAGGATGAATACGTGGTTGGAGATGAATTGGGGAGTCTGCAATGTGAGCATAGATATCATGTGGCTTGCATACAACAGTGGCTTCGCTTCAAGAACTGGTGCCCTATCTGCAAAGCATCAGCAGCACCTTCAGATTCATCTGTTGCCTCTAATCAGGCCTGA 1494 0.4311 MPHAFRSPPNTKDLGVQLCSRPNCSSKIYSSIIAENDSCMKGKSLRSPTQSCLSGKETVGRSCRTFSGTSNPRKSLKEPQQRTLPFRLETDSSDTSSIQDEPEVSVRIPSSSATYQSQRQAEQALVEVASTSGVSRTRSRRSFHQPGSRGQEAKSTSSVTRAGTSRYNLRNIKCKSINDVSSTDCSSSESTINRRKDMVKRRNCERESSSSVRGQNSSSGSSGISISGPRRSRNIHPHTDNIASVRTRRTMSSSARERIPSRGNARPMRPNESLALLPPMPRELSFPRHVSAESPLIQLSFPSRPGSSNGRPSSPSESDTTRPLTNRSRRRYQNSIAEVLLELERIEQDEDLTEEEIHLLETNFLLNGLYLYDQHRDMRMDIDNMSYEELLALEERMGTVSTALTEEALSECLKRSIFQPTPSDDDDGKININTINDDIKCSICQDEYVVGDELGSLQCEHRYHVACIQQWLRFKNWCPICKASAAPSDSSVASNQA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0720 497 Coils Coil 329 363 - -
Alju08g0720 497 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 69 486 IPR045191 GO:0061630
Alju08g0720 497 MobiDBLite consensus disorder prediction 238 259 - -
Alju08g0720 497 SUPERFAMILY RING/U-box 435 486 - -
Alju08g0720 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 495 IPR013083 -
Alju08g0720 497 MobiDBLite consensus disorder prediction 42 164 - -
Alju08g0720 497 FunFam E3 ubiquitin-protein ligase arkadia 401 487 - -
Alju08g0720 497 MobiDBLite consensus disorder prediction 42 78 - -
Alju08g0720 497 MobiDBLite consensus disorder prediction 298 330 - -
Alju08g0720 497 MobiDBLite consensus disorder prediction 85 164 - -
Alju08g0720 497 ProSiteProfiles Zinc finger RING-type profile. 441 482 IPR001841 -
Alju08g0720 497 MobiDBLite consensus disorder prediction 179 279 - -
Alju08g0720 497 Pfam Ring finger domain 440 482 IPR001841 -
Alju08g0720 497 MobiDBLite consensus disorder prediction 190 208 - -
Alju08g0720 497 SMART ring_2 441 481 IPR001841 -
Alju08g0720 497 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0720 Alju-ChrAlju08 5384914 5387278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0720 336 485 C3H Transcription Factor Family AT2G15530 41.333 8.76e-33 130