Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0700 ATGAGCAGTGGTACGCTGCGTTTTAAACCCCTCACCAAACTGCCGCATTTCTCTCATTTGTCATTTCCTCCGACATTCACGAATCACGACTCCCATACGGCTCTCGGCCTTGCTTGCGTCCACACCCTCTGGCCGCCGCTACTCCAGTCTTGCCGGCCGCCGCATCCCCTCTCCACTCTCGTTTCGTTGCTCACTACTGTCGAGAAGTTTGTGGAAGCAGTGAAAATGTCTTCCTCGTATCTCCCTGCTACAACGGAGACTATTGCACAGGCACTGGAGGCCAAAAACCCATCTGAGGCAATCTCTATTCTCTATCGTGTACTTGAGAACCCCTCTGCATCTCCAGAAGCTCTACGCATTAAAGAGCAAGCCATCACAAACCTCTCTGATCTTCTTAAGCAAGAGAATAGGGCAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTTTCCTTAATCCCTAAGGCAAAAACTGCAAAAATAGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCAGGGACATCTGATCTACAGATTGCACTCTGCAAAGAAATGGTGCAGTGGACTCGAGCTGAAAAGCGTACCTTTCTGAGGCAGCGGGTTGAGGCAAGGCTTGCGGCTCTTCTTATGGAAAATAAGGAGTATGCAGAAGCTTTGACTCTCCTTACTGGCCTGGTCAAAGAGGTTAGAAGATTGGATGACAAACTTCTTCTTGTGGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCCTTAAGGAACCTTCCAAAGGCAAAAGCTGCCCTCACAGCAGCAAGAACAGCTGCTAACGCTATTTATGTGCCCCCTGCTCAGCAAGGCGCCATTGATTTACAAAGTGGGATTCTTCACGCAGAGGAGAAGGATTATAAAACTGCATATAGTTATTTCTTTGAAGCTTTTGAGTCCTTCAATTCACTTGAAGACCCCAAGGCTGTTTTTAGCCTTAAATACATGCTGTTGTGCAAGATTATGGTGAGTCAAGCTGATGATGTGGCGAGCATTATATCTTCTAAAGCAGGCCTCCAATATGTTGGTCCTGACTTGGATGCCATGAAAGCTGTTGCAGATGCTCATTCTAAACGTTCCCTTAAGTTGTTTGAAATTGCTTTGCGGGACTACAAGGCACAATTGGAGGAAGACCCAATTGTCCACAGGCACCTGTCATCCCTTTATGATACCCTTCTGGAGCAGAACCTTTGCAGATTAATCGAGCCATTCTCGAGGGTCGAGATAGCGCATCTTGCTGAGCTAATTGAACTTCCCATTGATAATGTGGAGCGGAAGCTGTCCCAGATGATTTTGGACAAGAAGTTTGCTGGGACGTTGGATCAAGGTGCTGGATGCCTAGTCATATTTGATGATCCCAAGAGTGACGCCATATATCCTGCAACCTTGGAAACTATTTCCAACATAGGGAAGGTTGTGGACAGCCTTTATGTTCGGTCTGCCAAAATCATGGCATAG 1494 0.4679 MSSGTLRFKPLTKLPHFSHLSFPPTFTNHDSHTALGLACVHTLWPPLLQSCRPPHPLSTLVSLLTTVEKFVEAVKMSSSYLPATTETIAQALEAKNPSEAISILYRVLENPSASPEALRIKEQAITNLSDLLKQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYAEALTLLTGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNSLEDPKAVFSLKYMLLCKIMVSQADDVASIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFEIALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHLAELIELPIDNVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKSDAIYPATLETISNIGKVVDSLYVRSAKIMA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0700 497 Coils Coil 121 141 - -
Alju08g0700 497 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 468 493 IPR040780 -
Alju08g0700 497 SUPERFAMILY TPR-like 204 398 IPR011990 GO:0005515
Alju08g0700 497 Pfam PCI domain 360 461 IPR000717 -
Alju08g0700 497 ProSiteProfiles PCI domain profile. 298 466 IPR000717 -
Alju08g0700 497 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 89 493 - -
Alju08g0700 497 SUPERFAMILY "Winged helix" DNA-binding domain 389 471 IPR036390 -
Alju08g0700 497 FunFam 26S proteasome non-ATPase regulatory subunit 11 121 496 - -
Alju08g0700 497 SMART PCI/PINT associated module 218 394 - -
Alju08g0700 497 Coils Coil 201 221 - -
Alju08g0700 497 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 395 478 IPR000717 -
Alju08g0700 497 Gene3D - 121 496 - -
Alju08g0700 497 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 89 203 IPR040773 -