Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0642 ATGCAATGCAAGCTCCCCCACTTGTTGCAGAATAACAACATGGCCGCCGCGGATTCCTTTGTTGTCGAAGACCTTCTTCACTTCCCCAATGACGACGAACCTCTCCTCCTCGACGACGCTTCCCTTCATTCATTCCCCGGCGACTCAACCAATTCTTCCCCCCTTACCGCCCCTGCTACCTCCCCGGGCTCCCACTCTAATAATGCCGTCGCCGATAATATTGGCTGCCGCAGTTTCCAAGTCCCTCACTTTTCCGCCGACCTCTGCGTCCCCGTGCCGTATGATGATGACATGGCAGAGTTGGAATGGCTTTCGAACGTTGTGGAGGAATCATTTTCGAGCGAGGACCTGCAGAAGCTGCAGTTGATATCGGGGATGAAGGCCCGAAACGACGTCGTCGAAGCGTCCGAGGAAACTCACGAATTCCAGGCCGAAACCAACCGAAGCGTCAACAACAACAACCCCATATTCAACTCCGATGTCTCGGTTCCGGCAAAAGCTCGCAGCAAGCGCTCACGTGGCTCTCCATGCAACTGGACCTCTCGCCTCCTCCTCCTTTCTCCGTCTCAATCTCCAACGCCATCGCTATCCTCCGCATCATCTTCCTCAGACCCCGACCCCGTCCCCCTCCATTCCACCGGAAAGAAACCGGGGAAGGCGGCGTCAAGGCGGAAGGACAGCGGCGAGGGTCGCAAGTGCCTGCATTGTGCTACAGATAAGACACCGCAGTGGCGGACCGGACCCATGGGCCCCAAGACGCTTTGCAACGCGTGCGGGGTGAGGTACAAGTCAGGGCGGCTGGTGCCGGAGTACCGGCCGGCAGCGAGCCCGACGTTCGTGCTGACGAAGCATTCGAACTCGCACCGGAAGGTGATGGAGCTCCGGCGCCAGAAGGAAATGCAGCAACAGCAGCAGCAACATCAGTTTCTGCAACATCCCAATATGATGTTTGAGTTTCATGTGTCCAATGGGGACGATTACTTGATCCACCACCGCCTCGGCCCTGACTTCCGGCAGCTCATTTAG 1026 0.5741 MQCKLPHLLQNNNMAAADSFVVEDLLHFPNDDEPLLLDDASLHSFPGDSTNSSPLTAPATSPGSHSNNAVADNIGCRSFQVPHFSADLCVPVPYDDDMAELEWLSNVVEESFSSEDLQKLQLISGMKARNDVVEASEETHEFQAETNRSVNNNNPIFNSDVSVPAKARSKRSRGSPCNWTSRLLLLSPSQSPTPSLSSASSSSDPDPVPLHSTGKKPGKAASRRKDSGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMQQQQQQHQFLQHPNMMFEFHVSNGDDYLIHHRLGPDFRQLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0642 341 MobiDBLite consensus disorder prediction 134 234 - -
Alju08g0642 341 FunFam GATA transcription factor 223 308 - -
Alju08g0642 341 PANTHER GATA TRANSCRIPTION FACTOR 27 306 - -
Alju08g0642 341 MobiDBLite consensus disorder prediction 219 234 - -
Alju08g0642 341 PIRSF Txn_fac_GATA_plant 3 322 IPR016679 GO:0003677|GO:0005634|GO:0045893
Alju08g0642 341 MobiDBLite consensus disorder prediction 39 66 - -
Alju08g0642 341 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Alju08g0642 341 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Alju08g0642 341 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Alju08g0642 341 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Alju08g0642 341 MobiDBLite consensus disorder prediction 44 66 - -
Alju08g0642 341 MobiDBLite consensus disorder prediction 173 208 - -
Alju08g0642 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 291 - -
Alju08g0642 341 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Alju08g0642 341 MobiDBLite consensus disorder prediction 145 160 - -
Alju08g0642 341 Gene3D - 228 311 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0642 Alju-ChrAlju08 4753105 4754517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0642 84 341 C2C2-Gata Transcription Factor Family AT5G25830 57.554 3.61e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju08g0642 GATA 3.1e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0642 08 4753105 4754517 Alju08g0642 08 4753105 4754517 ECH