LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju08g0606	ATGAAAGGAGGGTTATTAGAAAACTTTTCAGGGAATCCTGGTCTCTGTGTGTTGCCGGTTTATGCTAACTCATCATACCAGAATTTCCCTGTGTGTTCACAAAGTAGCAGCAGAAAAAGGCTAAGTGTCATATGGGTAGGTGCAATTACAGTAGCTTTGGTCATCATTGTATTTGGAGCTGTATTGGCTATTATAAGGTGTAGGCCAACCAAAGATAAGTCAACCAAGGAACAAGATGATGAGTCACTATCTTCTTCATTCTTCTCCTATGACTTGAAGAGCTTCCACAAGTTAAATTATGATCGGCAGGAGATCATTGAGGCCATGGTGGACAAGAATATAGTGGGATACGGTGGATCAGGGACAGTGTATAAGATTGAGTTGAAGAGTGGTGAACATGTTGCAGTCAAGAAGTTATGGAGTCGAACATCAAAGGATTCAGCTCAAGAGGATCGCATGGGGTTGGACAAGGAGTTGAAAAATGAGGTGGCAACCTTAGGAAATATAAGACACAAGAACATAGTTAAACTGTACAGCTACTTCACTAGCTTGGACTTCAGCTTGTTGGTTTATGAGTACATGCCAAATGGTAATCTCTGGGATGCTCTGCACAAAAGCTGGATCAACTTGACTTGGCCTACACGTCATCAGATCGCGCTAGGGGTAGCACAAGGCTTAGCATACCTCCATCATGATCTGCTTCCTCCAATTATTCACAGAGACATCAAGTCCACAAACATCCTTCTGGATGCTCATTACCAGCCCAAGGTTGCAGATTTTGGAATCGCCAAGGTTTTACAAGCAAGAGGAGTCAACGATTCCACCACAACTGTGATTGCGGGAACATATGGTTACTTAGCCCCAGAATATGCATATTCATCAAGAGCAACAACCAAGTGTGATGTCTACAGTTTTGGCGTAATTCTTATGGAATTGATAACTGGGAAGAAGCCTGTGGAGGCAGAGTTTGGAGAGAACAGGAATATTGTATATTGGGTTTCAAACAAAGTAGACAGCAGAGAAGGGATTAATGAAATAATAGACAAGAGATTATCAGGTTTATTCAGGGAGGAGATTATACAAGTGATCCGAATTGCCATTAAGTGCACCTACAAATCTCCTGCTAATAGACCAACCATGAAAGAGGTGGTTCAGCGACTAATTGAAGCAGACCCATGCAAATACGATTCTGGCAAGTTGCCAGACAAGACCAGCACCAAATAA	1224	0.4224	MKGGLLENFSGNPGLCVLPVYANSSYQNFPVCSQSSSRKRLSVIWVGAITVALVIIVFGAVLAIIRCRPTKDKSTKEQDDESLSSSFFSYDLKSFHKLNYDRQEIIEAMVDKNIVGYGGSGTVYKIELKSGEHVAVKKLWSRTSKDSAQEDRMGLDKELKNEVATLGNIRHKNIVKLYSYFTSLDFSLLVYEYMPNGNLWDALHKSWINLTWPTRHQIALGVAQGLAYLHHDLLPPIIHRDIKSTNILLDAHYQPKVADFGIAKVLQARGVNDSTTTVIAGTYGYLAPEYAYSSRATTKCDVYSFGVILMELITGKKPVEAEFGENRNIVYWVSNKVDSREGINEIIDKRLSGLFREEIIQVIRIAIKCTYKSPANRPTMKEVVQRLIEADPCKYDSGKLPDKTSTK	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju08g0606	407	ProSiteProfiles	Protein kinase domain profile.	109	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju08g0606	407	Gene3D	Phosphorylase Kinase; domain 1	92	193	-	-
	Alju08g0606	407	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	237	249	IPR008271	GO:0004672\|GO:0006468
	Alju08g0606	407	FunFam	receptor protein-tyrosine kinase CEPR1	92	193	-	-
	Alju08g0606	407	SMART	serkin_6	109	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju08g0606	407	SUPERFAMILY	Protein kinase-like (PK-like)	100	387	IPR011009	-
	Alju08g0606	407	ProSitePatterns	Protein kinases ATP-binding region signature.	115	138	IPR017441	GO:0005524
	Alju08g0606	407	Pfam	Protein kinase domain	111	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju08g0606	407	FunFam	LRR receptor-like serine/threonine-protein kinase RCH1	194	405	-	-
	Alju08g0606	407	CDD	STKc_IRAK	115	389	-	-
	Alju08g0606	407	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	7	389	-	-
	Alju08g0606	407	Gene3D	Transferase(Phosphotransferase) domain 1	194	398	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju08g0606	Alju-ChrAlju08	4483013	4484400	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju08g0606	1	392	Receptor kinase-like Gene Family	AT5G49660	68.112	0.0	559

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Alju08g0606		Pkinase	2e-50	CL0016