Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0593 ATGGACAGTGTTTGCCTCAACAGCTCCAAACTGAAAGAACGCAACTACATGGGATTATCTGATTGTTCTTCAGTGGACAGCTCTGCTCAGTCCTTCTCTGACGAGAGTAAAACTAGGCTGAACCTAAAAGCTACAGAGCTGAGGCTTGGGCTTCCGGGATCTCAGTCTCCTGAAAGAGAAGACTCAGCTCATCGCTCCTTTGAAGGTTCAACTCAATTTGATGAGAAACCTCTTTTCCCCTTGCACCCTTCAACGGATGATCAACACCGCTCGTCAAAGAATGTTGTTTTGGGTAACAAAAGAGGGTTCTCAGATGCTATGAATGAGTTCTCCAAGGGGCAATTCCTAGCAAATTCGGAGGGGAATAGGATTTTGTCGCCTAGACCCTCTCCTAATTTAGGATTGAAAACTAGTTCTGTGCTTGATAAAACGAAAGAAGCAGCACCACCAAAGGTGGAACAAGAGGTTTCCCATGTTGTGAACGAAACAAAATCTAACCATAATGTTTCTGCAAATAACAGCAGCACACCTGCTACGAAGGCACAGGTTGTGGGTTGGCCTCCTATTAGATCATTTAGGAAAAAATCATTGGCTACCCCTACGAAAAATACTGAAGAAGTAGATGGAAAAGCACTCTTTGTCAAGGTCAGTATGGATGGTGCTCCATATTTGAGGAAAGTAGACTTGAAGAATTACAGTGCATATCCAGAACTATCTTCTTCTCTGGAGAAGATGTTCAGTTGTTTTACCATAGGTCCATGTGGATCTAACGGAACTCTGGGTAAGGGGATGCTGAATGAAAGCAAGATGAGGGATCTGCTTCGAGGGTCTGAATATGTTCTTACTTATGAGGACAAAGATGGTGACTGGATGCTTGTGGGAGATGTTCCCTGGGAGATGTTTGTTGAAACATGCAGGAGGATGAGGATCATGAAGAGTTCTGAAGCCATAGGCTTAGCTCCCAGAAAGAAATAA 975 0.4379 MDSVCLNSSKLKERNYMGLSDCSSVDSSAQSFSDESKTRLNLKATELRLGLPGSQSPEREDSAHRSFEGSTQFDEKPLFPLHPSTDDQHRSSKNVVLGNKRGFSDAMNEFSKGQFLANSEGNRILSPRPSPNLGLKTSSVLDKTKEAAPPKVEQEVSHVVNETKSNHNVSANNSSTPATKAQVVGWPPIRSFRKKSLATPTKNTEEVDGKALFVKVSMDGAPYLRKVDLKNYSAYPELSSSLEKMFSCFTIGPCGSNGTLGKGMLNESKMRDLLRGSEYVLTYEDKDGDWMLVGDVPWEMFVETCRRMRIMKSSEAIGLAPRKK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0593 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 39 318 IPR003311 GO:0005634|GO:0006355
Alju08g0593 324 ProSiteProfiles PB1 domain profile. 211 313 IPR000270 GO:0005515
Alju08g0593 324 FunFam Auxin-responsive protein 206 323 - -
Alju08g0593 324 MobiDBLite consensus disorder prediction 20 92 - -
Alju08g0593 324 MobiDBLite consensus disorder prediction 20 38 - -
Alju08g0593 324 Gene3D - 205 323 - -
Alju08g0593 324 Pfam AUX/IAA family 45 322 IPR033389 -
Alju08g0593 324 SUPERFAMILY CAD & PB1 domains 206 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0593 Alju-ChrAlju08 4360003 4361962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0593 225 316 B3 DNA Binding Superfamily AT1G19220 32.609 1.56e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju08g0593 AUX_IAA 2.8e-88 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0593 08 4360003 4361962 Alju08g0593 08 4360003 4361962 ECH