Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0590 ATGGAACTCCGTGAACATGATCATTTTTTGGAAGAATTACTGGCTATGAAAAGGGAAACATGGGACACCATCCCATCAGAACCAAACCAACTCTTCTCTAATAGCTGGGGTTTTGATTGTTTTGATCAAAACTCTCTGGCTTATCTTCCAAACTCTTCAACCTTTCAAGAAATTCCTCAGAGTTACCACAACAACAACAATTATGCCTTCAATGAAATCTACAGTTCATTACTTGATGAATTCTCTGCTCCTCCCCAGAATGTGGATTCATCTTCTTCATCCTATAACGTTCTTGATGCTCCAGTTCTGGGTCAAGAAGATTACCCATTGTCCATGATGGAAGATTTGGAGGATCCTGGTTTGCTTGGGGATGAACTTCAGAGTTTGGACCTGCAAGCCCCATGCAAGATAGAGCCAAGCCAATCCCCAGAAATGCCAGTTTTCAACATGGGTGATACTTCTTTGGAGAGAAAGAATCGAGCAAAGAAGCTTCAGGGCCAACCCTCCAAGAATTTAATGGCTGAGAGGAGGAGGCGAAAGAGGTTAAATGATCGCCTCTCAATGCTGAGATCAATTGTCCCCAAGATTAGTAAGATGGACAGAACATCTATCCTTGGAGACACTATAGATTACATGAAAGAACTCCTTGAGAAGATTAATAAATTGCAACAAGAATTAGAGGTGGATTCAAACATGGGAGGCATTTTCAAGGATGAAAAGCACAATGAACTCTTGGTGAGGAATACACCCAAGTTTGAAGTGAAGAGGAAGAATGAGGATACACAGATTGAAATTTGCTGTGCAGGAAAGCCAGGATTGTTGCAATCTACAATCAACACTTTGGAAGCACTTGGTCTTGAGATTGAACAGTGTGTCATTAGTTGTTTCAATGATTTCTGTGTCCAGGCTTCTTGCTCTGAGGAAATGGAGCAGAGGACAGTGCCAAGTTGTGAAGATATAAAGCAAGCTTTATTTAGAAGCGCAGGGTATGGAGGAAGATGTTTGTAG 1008 0.4147 MELREHDHFLEELLAMKRETWDTIPSEPNQLFSNSWGFDCFDQNSLAYLPNSSTFQEIPQSYHNNNNYAFNEIYSSLLDEFSAPPQNVDSSSSSYNVLDAPVLGQEDYPLSMMEDLEDPGLLGDELQSLDLQAPCKIEPSQSPEMPVFNMGDTSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINKLQQELEVDSNMGGIFKDEKHNELLVRNTPKFEVKRKNEDTQIEICCAGKPGLLQSTINTLEALGLEIEQCVISCFNDFCVQASCSEEMEQRTVPSCEDIKQALFRSAGYGGRCL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0590 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 228 IPR036638 GO:0046983
Alju08g0590 335 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 71 329 - -
Alju08g0590 335 Coils Coil 205 232 - -
Alju08g0590 335 Gene3D - 155 230 IPR036638 GO:0046983
Alju08g0590 335 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Alju08g0590 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Alju08g0590 335 SMART finulus 172 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0590 Alju-ChrAlju08 4347168 4348468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0590 148 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.445 2.07e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju08g0590 HLH 7.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0590 08 4347168 4348468 Alju08g0590 08 4347168 4348468 ECH