Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju08g0578 | ATGGGGAGAGGGAAGATCGTGATAAGGCGAATCGACAATTCGACGAGTAGGCAGGTAACGTTCTCGAAGCGAAGGAATGGTTTACTAAAGAAGGCGAAGGAGCTGGCAATACTGTGCGATGCTGAGGTTGGAGTAATCATCTTTTCCAGCACTGGAAAACTCTACGATTTTTCCAGCACCAGCATGAAATCAGTGATTGATCGATACAACAAAAATAAAGAAGATCAACACCCTCATATGGGGAGCTCAACGTCTGAAGTGAAGTTTTGGCAAAGGGAGGCAGCAATGTTAGGGCAACAATTGCAAAACTTGCAAGAAAATCACAGGCAAATGATGGGAGAAGAGCTTTCAAGTTTGACTGTAAAAGAATTACAGAATTTGGAAAGCCAAATGGAAATTAGCCTTCGGGGTGTCCGTATGAAAAAGGACCAACTTTTAATGAATGAAATACATGAACTAAATCAAAAGGGTAGCCTTATACACCAAGAAAATGTGGAGCTTTATAAGAAGGTCTATGAAACAAGATATGGGAACACAACAAACAGAAATTCTGTTCTTACGAATGGTCTGGGCATAGGAGAGGACTTTCAGGTTCCTGTAAATCTCCAACTCAGCCAGCCAGAGCAATAA | 630 | 0.4159 | MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFSSTSMKSVIDRYNKNKEDQHPHMGSSTSEVKFWQREAAMLGQQLQNLQENHRQMMGEELSSLTVKELQNLESQMEISLRGVRMKKDQLLMNEIHELNQKGSLIHQENVELYKKVYETRYGNTTNRNSVLTNGLGIGEDFQVPVNLQLSQPEQ | 209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju08g0578 | 209 | Gene3D | - | 13 | 94 | IPR036879 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 163 | - | - | |
| Alju08g0578 | 209 | Coils | Coil | 87 | 114 | - | - | |
| Alju08g0578 | 209 | SUPERFAMILY | SRF-like | 2 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
| Alju08g0578 | 209 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
| Alju08g0578 | 209 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977|GO:0045944 | |
| Alju08g0578 | 209 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju08g0578 | 209 | Pfam | K-box region | 83 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju08g0578 | Alju-ChrAlju08 | 4249402 | 4269175 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju08g0578 | 1 | 208 | MADS-box Gene Family | AT4G37940 | 63.942 | 5.11e-88 | 256 |
Transcription factors information