Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0576 ATGTCGACTCCAGGTGTCCAATGGCACCTTCATGGTCGTCATGTGGTGATGGATAATGGCATACTCCAAGTAACCTTATCAAACCCTGAGGGAATTGTTACTGGGATTCGATATAATGGTGTTGACAATTTGCTTGAGGTCCTTAACAATGAGACTAATCGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATAAAAGGAACATGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACACGAGTGTGGGATCCTTCTCTTGAGGGAAAGTTTGTTCCCTTAAATATTGATAAAAGATTTATTATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGCAATATATGAACACTTAGCTGGATGGCCGGATTTTGATATTGGTGAAACGAGGATTACTTTCAAGCTAAGAAAAGACAAGTTTAATTACATGGCTATAGAAGACAATAGGCAAAGGATTATGCCTCTTCCAGATGATCGGTTGTCGGGAAGATGCCAGCCCTTGGCCTACCCAGAAGCTGTCCTGCTAATCAATCCCAAAAATCCACAACTGAAAGGCGAGGTGGATGACAAGTATCAATATTCATCTATTAACATGAATAATCGAGTCCACGGTTGGATATCTTTCAACCCACCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTTAAGCAGAGTTTGACCTCACACGTTGGACCTACCACACTTGCTATGTTTCTTAGTTCACACTATGCTGGACAATATTTAGATCCCAAATTTCGAGGCGGCGAACCATGGAAGAAGGTTTTTGGTCCTGTTTTTATTTATCTTAACTCTGGATCAATTGGTGATGACCCTCTTTGGCTGTGGGAGGATGCAAAAATACAGATGACGACTGAAGTCCAAAGTTGGCCATATTTTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCAACGGGGTAATGTTAGTGGTAGGCTACTTGTGTTAGACAGGTGCATCTGCACAGATTTGATGCCGGCAAACGGTGCTTATGTTGGTCTTGCCCCACCAGGAGAGGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAACATGGATTTTTTACCATTAAGAATGTACGTCCAGGGGACTACAATCTTTATGCTTGGGTCCCTGGTTTTATTGGAGACTACAGATTTGATGATCCGATGAAGATAGATTCAGGTTCTTATATTGAACTGGGTGACATTGTGTATGAGCCCCCAAGGGATGGACCCACATTATGGGAAATAGGCATTCCCAATAGATCAGCTGCAGAATTTTATGTTCCTGATCCAAATCCGAATCTCGTTAATAGGCTCTTTGTCAACCATCCAGACAGGTTTAGGCAGTATGGATTGTGGGACAGGTATACAGAACTGTATCCTGATGCTGATTTGGTTTACACAGTTGGTGCTAGTGATTATTCTGAAGACTGGTTTTTCGCTCAGGTTCCCAGAAAGAAAGAGGACAACACTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCAGTAATGTTGCTCAGAGAAGTACGTATAAACTCAGAGTTGCAATTGCATCTGCAACATTAGCCGAAATGCAGATTCGAATAAATGATCCAAATGCAAAGCGCCCTCTATTTACCACTGGATTAATAGGAAGGGACAACTCAGTTGCAAGACATGGAATCCATGGGCTCTATTGGCTGTACAATGTGAATTTGTCAGGTGCTGCTCTTGTCAATGGCATAAACACACTATTTTTAACGCAGCCAAGATGCCAAAGCCCTTTTCAGGGGATCATGTATGATTATATTCGTTTGGAAGGTCCTCCTTGTTTTTAG 1905 0.4247 MSTPGVQWHLHGRHVVMDNGILQVTLSNPEGIVTGIRYNGVDNLLEVLNNETNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRVWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAIEDNRQRIMPLPDDRLSGRCQPLAYPEAVLLINPKNPQLKGEVDDKYQYSSINMNNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAMFLSSHYAGQYLDPKFRGGEPWKKVFGPVFIYLNSGSIGDDPLWLWEDAKIQMTTEVQSWPYFFPASEDFLKSDQRGNVSGRLLVLDRCICTDLMPANGAYVGLAPPGEAGSWQRECKDYQFWTRADEHGFFTIKNVRPGDYNLYAWVPGFIGDYRFDDPMKIDSGSYIELGDIVYEPPRDGPTLWEIGIPNRSAAEFYVPDPNPNLVNRLFVNHPDRFRQYGLWDRYTELYPDADLVYTVGASDYSEDWFFAQVPRKKEDNTLQGTTWQIKFELSNVAQRSTYKLRVAIASATLAEMQIRINDPNAKRPLFTTGLIGRDNSVARHGIHGLYWLYNVNLSGAALVNGINTLFLTQPRCQSPFQGIMYDYIRLEGPPCF 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0576 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Alju08g0576 634 Gene3D - 7 307 IPR014718 GO:0030246
Alju08g0576 634 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Alju08g0576 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
Alju08g0576 634 SUPERFAMILY Galactose mutarotase-like 13 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Alju08g0576 634 CDD RGL4_N 8 293 - -
Alju08g0576 634 Pfam Rhamnogalacturonate lyase family 12 200 IPR010325 -
Alju08g0576 634 CDD RGL4_C 442 629 - -
Alju08g0576 634 SUPERFAMILY Starch-binding domain-like 330 427 IPR013784 GO:0030246
Alju08g0576 634 CDD RGL4_M 331 430 IPR029413 -
Alju08g0576 634 Gene3D - 328 415 - -
Alju08g0576 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 632 - -
Alju08g0576 634 Gene3D - 438 629 - -
Alju08g0576 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0576 Alju-ChrAlju08 4215733 4220689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0576 1 632 Polysaccharide Lyase AT1G09910 71.519 0.0 954