Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0575 ATGCACAACCATGATTTTGCTGGTATACTTTCACGTAATGAATTTGTTGCGAAAACAGTTATGGCTTGGTTGCCATATGTGCTTAGCTATGCTCTTTAAGTGCAACTGCTTATTGAAGATAGTCATGTGGTGATTGAGAATGGCATACTAAAGGTGACCTTGTCAAATCCTGAGGGAATAGTCACAGGAATAGAATATAATGGTATCGACAACTTGCTGGAATATCTGAACGAGGAATCTAATAGAGGGTACTGGGACCTTGTGTGGAGCTCACCGACAAGTCCCGGAACCAAAGGAATGTTTGATGTGATAAAGGGAACAAAGTTCCAAGTGATAGTGGAAAATGAAGAACAAGTTGAGTTATCCTTCACAAGAACGTGGGATGTCTCACTTGAAGGCAAGCTGGTTCCATTAAACATCGATAAAAGGTTCATAATGCGTCGAGGTTGTTCAGGCTTCTACTCCTATGCTATATACGAACACTCAGATGACTGGCCCGCTTTCGATATGGACGAAACCAGAATTGCGTTCAAGCTCAGCAGAGAAAAGTTTCATTACATGGCAATGGCAGATAATAGACGTAGAAAGATGCCTCTTCCTTGTGACAGAGACTCCCCTAGAGGCCAAAAACTTGCCTATCCTGAGGCTGTTCTTCTGGTTAATCCTGTCGACCCTGAAATGAAAGGAGAGGTGGACGACAAGTACCAATATTCATGCGACAACAAGGATAGCAAGGTGCATGGATGGATTTGCACGGAGCCGGCGGTCGGATTCTGGCTAATAACTCCCAGCAACGAGTTCCGATCCGGTGGACCCGTCAAACAGAACCTAACTTCTCATGTGGGACCCACCACTCTTGCTGTGTTTCTAAGCGCTCATTATAGCGGAGAAGATCTGGTGCCAAAATTCAAAGCTGGCGAGGCGTGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTTCCGATAATGAAGACAACCTATTTAATCAGCTATGGGAAGACGCTAAACTTCAGATGCAGATAGAAGTTCAGAGTTGGCCCTACAATTTTCCTGCCTCACAAGATTACCTAAAGTGGGACGAACGTGGTAATGTCAATGGTAGGCTACTCGTCCGAGACAGGTATATTAGAGATGGTAATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTCCACCAGGTGACGCTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACGATGAAGGATATTTCTCCATCAGCAATATACGCCCTGGTGACTATAATCTTTACGCTTGGGTCCCTGGTTTTATTGGGGATTATAGATATGATGAGGTTATGAACATAACTCCAGGCTGTGACATAGTCGTAGGTGATATTGTGTATGAACCTCCTAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGACCGTACAGCTGCTGAGGTTTTTGTTCCTGATCCCAATCCCAAATATGTCAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGGCAGTATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACGAAGACTTGATTTACACAGTTGGTGTTAGTGACTGCACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTCGAACTGGACAAAGTGAACAAGAGAGGTTCCTATAAACTGCGCATAGCTCTAGCATCAGCAACATTTTCTGAACTGCAGGTTAGAGTGAATGATCCAAAAGCAGCTCGTCCTGTGTTTTCAAGTGGGTTGTTAGGAAGAGATAACTCCATTGCTAGGCATGGCATTCATGGGCTGTATTGGCTTTTCACTGTTGACATATTGGGTGCTCGACTCGCTGAAGGAGATAATACCATCTTTTTGACTCAGTCAAGAGCCAGTGGCCCCTTTGTGGGCATTATGTATGATTATATTCGTTTAGAAGGCCCTCCCTCCTCTGCTTCCAACGACGATATTTGA 2019 0.4368 MHNHDFAGILSRNEFVAKTVMAWLPYVLSYALXVQLLIEDSHVVIENGILKVTLSNPEGIVTGIEYNGIDNLLEYLNEESNRGYWDLVWSSPTSPGTKGMFDVIKGTKFQVIVENEEQVELSFTRTWDVSLEGKLVPLNIDKRFIMRRGCSGFYSYAIYEHSDDWPAFDMDETRIAFKLSREKFHYMAMADNRRRKMPLPCDRDSPRGQKLAYPEAVLLVNPVDPEMKGEVDDKYQYSCDNKDSKVHGWICTEPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSDNEDNLFNQLWEDAKLQMQIEVQSWPYNFPASQDYLKWDERGNVNGRLLVRDRYIRDGNISAKGAYVGLAPPGDAGSWQRECKNYQFWAKADDEGYFSISNIRPGDYNLYAWVPGFIGDYRYDEVMNITPGCDIVVGDIVYEPPRDGPTLWEIGIPDRTAAEVFVPDPNPKYVNKLYVNHPDKFRQYGLWERYAELYPDEDLIYTVGVSDCTKDWFFAQVTRKKDDNTYQGTTWQIKFELDKVNKRGSYKLRIALASATFSELQVRVNDPKAARPVFSSGLLGRDNSIARHGIHGLYWLFTVDILGARLAEGDNTIFLTQSRASGPFVGIMYDYIRLEGPPSSASNDDI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0575 672 Pfam Polysaccharide lyase family 4, domain III 472 660 IPR029411 -
Alju08g0575 672 Pfam Polysaccharide lyase family 4, domain II 386 457 IPR029413 -
Alju08g0575 672 Pfam Rhamnogalacturonate lyase family 38 231 IPR010325 -
Alju08g0575 672 SUPERFAMILY Galactose mutarotase-like 40 334 IPR011013 GO:0003824|GO:0005975|GO:0030246
Alju08g0575 672 Gene3D - 362 452 - -
Alju08g0575 672 Gene3D - 35 342 IPR014718 GO:0030246
Alju08g0575 672 SUPERFAMILY Starch-binding domain-like 363 451 IPR013784 GO:0030246
Alju08g0575 672 Gene3D - 470 661 - -
Alju08g0575 672 CDD RGL4_C 474 661 - -
Alju08g0575 672 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 40 664 - -
Alju08g0575 672 CDD RGL4_M 363 462 IPR029413 -
Alju08g0575 672 CDD RGL4_N 39 329 - -
Alju08g0575 672 SUPERFAMILY Galactose-binding domain-like 469 661 IPR008979 -
Alju08g0575 672 FunFam Rhamnogalacturonate lyase B 360 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0575 Alju-ChrAlju08 4210273 4215550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0575 28 663 Polysaccharide Lyase AT1G09890 70.801 0.0 944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0575 08 4210273 4215550 Alju08g0575 08 4210273 4215550 ECH