Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0573 ATGATGATGTTGATCCTCACCAACTGTTTCCTGTTCTTCTTGCTGCTGCTGGTTTTGGTTCTGGGCTATGTCTCTTTTCCAGGAGTGCGATTGGAAATTCAAGAAAAACATATTGTGATGGATAATGGCATAGTCCAAGTCACCTTATCAAATCCTGGAGGATCAGTCACCGGAATCCAATACAATGGAATTGACAATTTGCTTGAAGTCCAAAACATGGAATTTGACAGAGGTTACTGGGATGTTGTATGGAGCGAGGCCGGTAAAAATGGAACAAAGGGTACATTGGATAGGTTGGAAACCACAAATTTTACAGTAGTTGTTCAAAATGAAGAACAGTTAGAGTTGTCATTCACCAGAACATGGCAGCCTTCCCTTGAGGGAAAGATTCCGCCCCTCAGTATCGATAAAAGATTTATTATGCTTCGTGGTTCATCGGGCTTCTACACTTATGCCATATACGAGCATTTGAAGGGATGGCCTGCCTTCAATCTTGACAATACTCGGATTGCATTTAAGCTTCGGAAAGACAAGTTCCATTACATGGTTGTAGCAGACAAAAGGCAAAGATTCATGCCTCTGCCTGATGACCGGTTGGAAGGAAGAGGGCAAGTTCTAGCCTATCCTGAAGCTGTCCTCCTCGTCGATCCTGTTGAACCTGAATTCAAAGGGGAGGTGGATGACAAATATCAGTACTCGTGCGAGAGTCGCAACAACAGGGTTCATGGCTGGATATGTATGGATCAACCTGTTGGGTTGTGGCAAATTACACCCAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACATCACTTCTCACGTGGGCCCCACCACACTCTCTGTATTTCACAGCACCCATTATTCAGGAGCAGATCTAGTAATGAAATTTGGGGCGGAAGAAGAATGGAAGAAAGTATATGGGCCCATTTTCATATACCTTAATTCTTTGTCTAACGGAGAAAGCCCGGCCACGCTATGGGAAGACGCTAAACAGCAGACGGTCAACGAAATTGAAAGGTGGCCCTATGCATTTCCAGCTTCACAAGACTTTCCCTCATCTTACCAACGAGGCAAGGTTAAAGGGAGATTAGTGGTACAAGACAGGTATATCACTGATGGGTGTGTCCCAGCGAGTGGGGCTTATGTGGGATTAGCTGCAACTGGAGATGCAGGATCTTGGCAGAGAGAATACAAGGGTTATCAATTTTGGACCATCACTGATGATAAAGGTTACTTCATAATCACTGACATACGGGCGGGGCAATATAATCTCTACTCCTGGGTCAATGGGTTTATCGGCGATTATCGATATGACAATGTCATTAACATAACCTCAGGTTGTGAAGTTGATGTGGGGGAACTTGTTTATGAGCCTCCAAGAGATGGCCCTACATTGTGGGAAATAGGCATCCCTGATCGCACTGCAGCTGAATTCTATATCCCAGATCCAAATCCCAAGTACATTAACAAACTTTATGTCAAACATCCAGATAGGTATAGGCAATATGGATTGTGGGAGAGGTATGCAGAGTTATATCCAAATGAAGACTTAGTCTACACTATAGGAACCAGTGACTACAAAAAAGATTGGTTTTTTGCTCAAGTTAATAGGAAGATAGATAACAACACATACCAAGAAACCACATGGCGAATTAATTTCAAGCTTGATAGTGTAAATACCAATGGAACCTACAAATTGCGATTGGCTCTGGCATCTGTGCACTCTGCTGAGCTGCAAGTTCGGGTAAATAACTCAGAAGCAAACCCACCTTTGTTCACAAGTGGAGTGATTGGGAAGGAGAACACAATAGCCAGACATGGAATTCATGGGCTATATTGGCTGTTCAACGTTGATTTACAAGGCACTCTTCTTGTGCAGGGGAATAATACCTTTTTTCTAAAGCAACCAAGAAACACAAGTCCTTTTCAAGGGATTTTGTATGATTATATTCGCTTAGAAGGGCCCTCTTCTGTAACTAGTAATATATGA 1995 0.4321 MMMLILTNCFLFFLLLLVLVLGYVSFPGVRLEIQEKHIVMDNGIVQVTLSNPGGSVTGIQYNGIDNLLEVQNMEFDRGYWDVVWSEAGKNGTKGTLDRLETTNFTVVVQNEEQLELSFTRTWQPSLEGKIPPLSIDKRFIMLRGSSGFYTYAIYEHLKGWPAFNLDNTRIAFKLRKDKFHYMVVADKRQRFMPLPDDRLEGRGQVLAYPEAVLLVDPVEPEFKGEVDDKYQYSCESRNNRVHGWICMDQPVGLWQITPSYEFRSAGPLKQYITSHVGPTTLSVFHSTHYSGADLVMKFGAEEEWKKVYGPIFIYLNSLSNGESPATLWEDAKQQTVNEIERWPYAFPASQDFPSSYQRGKVKGRLVVQDRYITDGCVPASGAYVGLAATGDAGSWQREYKGYQFWTITDDKGYFIITDIRAGQYNLYSWVNGFIGDYRYDNVINITSGCEVDVGELVYEPPRDGPTLWEIGIPDRTAAEFYIPDPNPKYINKLYVKHPDRYRQYGLWERYAELYPNEDLVYTIGTSDYKKDWFFAQVNRKIDNNTYQETTWRINFKLDSVNTNGTYKLRLALASVHSAELQVRVNNSEANPPLFTSGVIGKENTIARHGIHGLYWLFNVDLQGTLLVQGNNTFFLKQPRNTSPFQGILYDYIRLEGPSSVTSNI 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0573 664 CDD RGL4_N 37 317 - -
Alju08g0573 664 Pfam Polysaccharide lyase family 4, domain III 466 654 IPR029411 -
Alju08g0573 664 SUPERFAMILY Starch-binding domain-like 355 452 IPR013784 GO:0030246
Alju08g0573 664 CDD RGL4_C 468 655 - -
Alju08g0573 664 CDD RGL4_M 357 456 IPR029413 -
Alju08g0573 664 SUPERFAMILY Galactose-binding domain-like 463 655 IPR008979 -
Alju08g0573 664 Gene3D - 464 655 - -
Alju08g0573 664 Pfam Polysaccharide lyase family 4, domain II 380 452 IPR029413 -
Alju08g0573 664 SUPERFAMILY Galactose mutarotase-like 37 319 IPR011013 GO:0003824|GO:0005975|GO:0030246
Alju08g0573 664 Gene3D - 354 453 - -
Alju08g0573 664 Pfam Rhamnogalacturonate lyase family 32 226 IPR010325 -
Alju08g0573 664 Gene3D - 30 329 IPR014718 GO:0030246
Alju08g0573 664 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 34 658 - -
Alju08g0573 664 FunFam Rhamnogalacturonate lyase B 354 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0573 Alju-ChrAlju08 4202837 4208319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0573 29 658 Polysaccharide Lyase AT1G09890 65.931 0.0 877