Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0572 ATGTCAACACAAGGAGTGCAGCTGCATATAGGAGACAATCATGTGGTGATGGATAATGGCATAGTGAAAGTGTACTTAGCTAAACCAGGAGGATTTGTCACTAGAATACAATACAACGGCGTTGATAACATTCTTGAAGTTCTTAACCAAAGAGATAACAGAGGATATTGGGACGTCGTTTGGAGTGAAGAAGGCAGTACAGGAACCACTGGGACATTCGAGCGCGTGGTGGGAACAAGTTTTAGAGTGATAGTGGAAAATGAGGAACAGGTGGAGATCTCATTTACGAGAATGTGGGACCCATCTCTGAAGGGAAAGCTTTCGCCATTGAATATAGACAAAAGGTATGTCATGCTTCGTAATTCCCCAGGCTTCTACTCATACGCCATTTTTGAACACCTAAAAGAATGGCCCGCTTTCAACATACCCCAGATCAGAATCGTCTTCGTCCTCAGAAAAGACAGGTATCATTACATGGCCGTAGCCGATAATAGGCAAAGATTCATGCCACTTCCTGACGATAGATTACCTGGAAGAGGAAAAGAACTTGCCCCTCCAGAAGCAGTTTTACTTGTGAATCCTATAGAACCAGAGTTCAAGGGGGAGGTGGATGACAAGTATCAATACTCGTGTGACAACAAAGATCTGAAGGTTCATGGGTGGATCAGCTCCGAAAAAGAAACTGAAGCTCCAATGGGTTTTTGGGTAATCATACCTAGCAATGAATTCCGATCAGGTGGGCCCGTTAAACAGAACCTCACCTCTCATGTGGGCCCCATAAGCCTCGCTATGTTCTTAAGTGCTCATTATGCTGGTGAGGATCTAGTTCTAAAACTCAAACCGAATGAGCCTTGGAAGAAAGTATTTGGGCCAATCTTTGTGTATCTGAACACTTTTTCGGATGATCAAGACGCACCATGGCTCTGGGAGGATGCCAAAGATCAGATGACAAAGCAAGTTCAAAGTTGGCCTTATGATTTTCCAGCTTCAGAGGATCATCAGAAGTCTGACCAACGAGGCGGTGTTTGTGGCACAATACGAGTCCGAGACAGGTGTCAAAGTGACGATTATATATTGGCACAAGGTGCATATGTAGGACTAGCCCCACCTGGAGACGCCGGATCATGGCAAAGAGAATGTAAGGGATACCAATTCTGGACAAGAACAAACGAGGAAGGCTACTTCTCCATTAACAACATTCGTAGTGGGGACTACAATCTCTATGCATGGGTTCCTGGTTTCATCGGAGAATACTGGAACAATGTTGTCCTCACCATCACCCCAGGTAGTGAAATAAATGTTGGTGACATTGTTTATGAGCCCCCGAGAGATGGTCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTAATCCCATGTACATTAACAAGCTCTATGTCAACCATCCAGATAAGTTTAGGCAGTATGGTTTGTGGGAAAGATATGCAGAACTATATCTAAACGAGGATCTGGTTTATACGGTCGGTGTTAGTGACTATGGGAAAGATTGGTTCTTTGCACAAGTCACCAGGAAGAAAGATGATGGAACTTACCAAGGAACTACATGGCAAATCAAGTTCAAGCTTGATAATGTGGTGGGAGGTGGGACGTATAAGTTAAGGTTGGCACTTGCAACTGCAAATGCAGCCGAATTACAGGTGAGAGTGAATGATCCGAAGCAAGAGCCAGCTGTGTTCAGGAGTGGTTTGATTGGAAAGGACAACACAATAGCTAGGCATGGAATCCATGGACTCTACAGGCTATACAGTATTGATGTATGGGGTGGTCTTCTGATAAAAGGAGAAAATACTCTGTATCTCACGCAGGCTATAGCTACTGGTCCTTTCGAAGGGATTATGTATGACTATATACGCCTTGAAAGCCCACAATAA 1920 0.4422 MSTQGVQLHIGDNHVVMDNGIVKVYLAKPGGFVTRIQYNGVDNILEVLNQRDNRGYWDVVWSEEGSTGTTGTFERVVGTSFRVIVENEEQVEISFTRMWDPSLKGKLSPLNIDKRYVMLRNSPGFYSYAIFEHLKEWPAFNIPQIRIVFVLRKDRYHYMAVADNRQRFMPLPDDRLPGRGKELAPPEAVLLVNPIEPEFKGEVDDKYQYSCDNKDLKVHGWISSEKETEAPMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDLVLKLKPNEPWKKVFGPIFVYLNTFSDDQDAPWLWEDAKDQMTKQVQSWPYDFPASEDHQKSDQRGGVCGTIRVRDRCQSDDYILAQGAYVGLAPPGDAGSWQRECKGYQFWTRTNEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNVVLTITPGSEINVGDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHPDKFRQYGLWERYAELYLNEDLVYTVGVSDYGKDWFFAQVTRKKDDGTYQGTTWQIKFKLDNVVGGGTYKLRLALATANAAELQVRVNDPKQEPAVFRSGLIGKDNTIARHGIHGLYRLYSIDVWGGLLIKGENTLYLTQAIATGPFEGIMYDYIRLESPQ 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0572 639 Pfam Polysaccharide lyase family 4, domain III 447 635 IPR029411 -
Alju08g0572 639 Gene3D - 335 435 - -
Alju08g0572 639 CDD RGL4_C 449 636 - -
Alju08g0572 639 CDD RGL4_M 338 437 IPR029413 -
Alju08g0572 639 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
Alju08g0572 639 SUPERFAMILY Starch-binding domain-like 362 437 IPR013784 GO:0030246
Alju08g0572 639 Gene3D - 7 275 IPR014718 GO:0030246
Alju08g0572 639 CDD RGL4_N 12 305 - -
Alju08g0572 639 Gene3D - 445 636 - -
Alju08g0572 639 FunFam Rhamnogalacturonate lyase B 335 434 - -
Alju08g0572 639 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 638 - -
Alju08g0572 639 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Alju08g0572 639 SUPERFAMILY Galactose-binding domain-like 444 636 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0572 Alju-ChrAlju08 4198039 4201476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0572 1 638 Polysaccharide Lyase AT1G09890 65.415 0.0 873