Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju08g0563 | ATGTACGGACAACTCCCATCAATGAACGTCACTAATCGGATCAGCACCGGAGAAGATGAAGATGGCGACGGCATTGGCGCCGAATCAATTGATAATCACAACATCCATTACGAAACGCAAGCCCTCGAAGATGGCAGTGGTGGAGTCGGGGGCGTAGTGGAGGATGTGAACTCCGATACCGTATATGTTTCCGGCAGTGGTTCTGAATTGTCCATCCCTCACGAGGATCCTAGCCAACTTACGCTTTCATTCCGTGGTCAAGTATACGTTTTTGATTCTGTTACCCCTGATAAGGTGCAAGCGGTATTGTTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAGTGTGAGGATATAGCCCCTCAAAATGAGAGGGGTGCGATGGATTACCCTGGAAGATGTAGTCAGCCACACCGAGCAGCCTCTTTAAGCAGGTTTCGTCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTTGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCTTCTAAGAAGCAAGATGGAGCTAATAGTTTGGGAACAGTCCAAGAGTCAGGGCAGGATGACAGTCAATCAGAAACCTCGTGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGTGGGCCATCCGGACCAAGGTCACTGTGCAATGCTTGTGGACTTTTTTGGGCAAACAGGGGTACTTTGAGGGACTTATCCAAGAAGAACCACGAACATTCTCTTCCACCAGCTGAGCAGGTTGAACGGGATGATTCACATTCTCAGACAGCTAACCCTGCATGTAACAATCTTGTGGTGTTCTCCGATAATGATAAGCCGGCATAG | 873 | 0.4822 | MYGQLPSMNVTNRISTGEDEDGDGIGAESIDNHNIHYETQALEDGSGGVGGVVEDVNSDTVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDIAPQNERGAMDYPGRCSQPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSLGTVQESGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNHEHSLPPAEQVERDDSHSQTANPACNNLVVFSDNDKPA | 290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju08g0563 | 290 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 25 | 269 | IPR045280 | GO:0006355 | |
| Alju08g0563 | 290 | SMART | tify_2 | 73 | 108 | IPR010399 | - | |
| Alju08g0563 | 290 | MobiDBLite | consensus disorder prediction | 251 | 290 | - | - | |
| Alju08g0563 | 290 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Alju08g0563 | 290 | CDD | ZnF_GATA | 207 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
| Alju08g0563 | 290 | MobiDBLite | consensus disorder prediction | 251 | 268 | - | - | |
| Alju08g0563 | 290 | MobiDBLite | consensus disorder prediction | 181 | 221 | - | - | |
| Alju08g0563 | 290 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Alju08g0563 | 290 | ProSitePatterns | GATA-type zinc finger domain. | 208 | 235 | IPR000679 | GO:0006355|GO:0043565 | |
| Alju08g0563 | 290 | Pfam | CCT motif | 140 | 182 | IPR010402 | GO:0005515 | |
| Alju08g0563 | 290 | ProSiteProfiles | Tify domain profile. | 73 | 108 | IPR010399 | - | |
| Alju08g0563 | 290 | Pfam | GATA zinc finger | 208 | 244 | IPR000679 | GO:0006355|GO:0043565 | |
| Alju08g0563 | 290 | ProSiteProfiles | CCT domain profile. | 140 | 182 | IPR010402 | GO:0005515 | |
| Alju08g0563 | 290 | Pfam | tify domain | 76 | 107 | IPR010399 | - | |
| Alju08g0563 | 290 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 204 | 255 | - | - | |
| Alju08g0563 | 290 | MobiDBLite | consensus disorder prediction | 173 | 227 | - | - | |
| Alju08g0563 | 290 | SMART | GATA_3 | 202 | 255 | IPR000679 | GO:0006355|GO:0043565 | |
| Alju08g0563 | 290 | ProSiteProfiles | GATA-type zinc finger domain profile. | 202 | 251 | IPR000679 | GO:0006355|GO:0043565 | |
| Alju08g0563 | 290 | Gene3D | - | 198 | 257 | IPR013088 | GO:0006355|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju08g0563 | Alju-ChrAlju08 | 4071006 | 4076255 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju08g0563 | 1 | 280 | Tify Gene Family | AT4G24470 | 53.608 | 2.53e-88 | 264 |
Transcription factors information