Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0523 ATGACAATTCATTCCCACACTCCCCCTCCTCCCATTCTCCCACTCGATCATCACCATGGCCTCCGCTGCCTTGCCCTCTTTCTACTCTCCTTCCCGGCCACCGCGCAGTTCTCCGCAGCGCCTCCGCCTCCGTCCACCGACCCCTTTGCAAGGCTTAAGTTCGACAAGAACATGGCCATCATCATGGTCATCCTGGTCCTCGTGTTCTTCATTCTGGGCTTCCTTTCCATCTACACTCGCCAATGCGCAGAGCGCAGAATGAGAGGAAGACTCGACCTCGCTCTCCCCATCGGCATCAGCAGCCGGCGACCGCGCGGTCTTGACCCCGAGATCATCGACAGTTTTCCCACTTTCGTTTATTCCTCCGTCAAGGGGCTTAAGATGGGGAGGACCTCGCTGGAATGCGCCGTCTGCTTGAACGAGTTCGAAGACGATGAAACCCTGCGTTTGATACCCAAATGCAGCCACGTGTTTCATCCTGATTGTATCGATCTTTGGCTGTCCTCTCACTCCACCTGCCCCCTATGCCGGGCCAACCTTATTCCTAAACCCGGTGATTCATCCTTCGTCGCCGTTCAGATCCCCAATCCGGACGTCGATTCCCCTCAGCCTGATTCGAGTCTTAATACCCGTGAGGTCCCCTATGACAACATCAATACGGCGGCGCCTGAGACTCCGAGTCTGAGCCGAAATCAGACCGTGAACCGGAGCAGGACACCTTGGTCAAAGTCGACGGGGTTTCCATTGGCCGGATTATTCCCGCGTTCTCACTCCACGGGTCATTCCTTCCAGATTCAGCCCGGAGAGAATTGGGAAAGGTTTACTCTGAGATTAACGGAGGATGCCCGAAAGCAGTTACTAAAGCGCACAAATAGTTGCGTAGCGTTCACAAGGGAGATCAGTCAGAGGAGGGGTTATAGGACAAGCAGTGTGGGGAGTGGACGCGGAAGGAACTATTTCCAGTACGAGCGATTCGGCGGCGAGGGGCGGCCGGACCAGTGGGGCTTCACGATGAGGCCGCCGTTTTTGAGCAGGAGTAGTTCGATGGTGGCCAACAAGGCACCGGTGGGTCCATCGGAGTTGGCTATGGACGACATCGGGGAACGATCTTCAGATCCATTGTTTCCCAGAAACAAAGATTAG 1143 0.5556 MTIHSHTPPPPILPLDHHHGLRCLALFLLSFPATAQFSAAPPPPSTDPFARLKFDKNMAIIMVILVLVFFILGFLSIYTRQCAERRMRGRLDLALPIGISSRRPRGLDPEIIDSFPTFVYSSVKGLKMGRTSLECAVCLNEFEDDETLRLIPKCSHVFHPDCIDLWLSSHSTCPLCRANLIPKPGDSSFVAVQIPNPDVDSPQPDSSLNTREVPYDNINTAAPETPSLSRNQTVNRSRTPWSKSTGFPLAGLFPRSHSTGHSFQIQPGENWERFTLRLTEDARKQLLKRTNSCVAFTREISQRRGYRTSSVGSGRGRNYFQYERFGGEGRPDQWGFTMRPPFLSRSSSMVANKAPVGPSELAMDDIGERSSDPLFPRNKD 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0523 380 CDD RING-H2_EL5-like 134 177 - -
Alju08g0523 380 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Alju08g0523 380 MobiDBLite consensus disorder prediction 199 244 - -
Alju08g0523 380 PANTHER RING FINGER DOMAIN-CONTAINING 36 188 - -
Alju08g0523 380 MobiDBLite consensus disorder prediction 365 380 - -
Alju08g0523 380 Pfam Ring finger domain 134 177 IPR001841 -
Alju08g0523 380 SUPERFAMILY RING/U-box 129 185 - -
Alju08g0523 380 MobiDBLite consensus disorder prediction 195 247 - -
Alju08g0523 380 MobiDBLite consensus disorder prediction 347 380 - -
Alju08g0523 380 FunFam E3 ubiquitin-protein ligase ATL6 97 183 - -
Alju08g0523 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 182 IPR013083 -
Alju08g0523 380 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0523 Alju-ChrAlju08 3760020 3761162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0523 16 346 Rapid Response to Elicitors AT3G05200 39.655 1.28e-63 206