Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0521 ATGGCACTAGAGGCTGTGGTTTTCTCACAGGATCCCTTCTCGTATAGTTGCTGCAAGGACTCATACTCCTTCGCTGCAGCCTGGAACCTCGGCAAGCATGGCTTCCATGCAGAGGAAGAAAAAGCCCCTGTCGGAGTACTCATCAGCAGGAACATGGAACCCAGACATGGCCACGCAACTTGGGATTCTAACTCTTCTCCCGATCAGGCCCGCCGATCACTTGTCTCCCCTGCCCCCTCGGGTCGGCGTAAACGACGTCGCACCAAGAGCGCCAAGAACAAGGACGAGCTTGAGAACCAGAGGATGACTCACATTGCGGTGGAGCGCAATCGACGGAGGCAGATGAATGATTACCTGGCGGTGCTTCGCTCCTTGATGCCTCCGTCTTACGTTCAAAGGGGGGACCAAGCTTCTATAATAGGAGGCGCCATTAACTTCGTGAAGGAGCTAGAGCAGCTGTTGCAGTCAATGGAAGGACGAAAGAAGAAGACGAAGCAACAATCAGAGACGTGTAGCTCGCCGTTCGCCGAGTTCTTCACGTTCCCTCAGTACTCCACTCATGCAAATAACGGCAATACCAGTACCCAGCAATGGGCCGCCGCAGACATCGAGGTCACCATGGTGGATACCCACGCCAGCCTCAAGATACTCTCCAAGAAACGTTCCAACCAGCTCACCAAGATCGTCGTCGGCCTTCAGGCCCTCCGCCTCAACGTTCTCCACCTCAACGTCTCCACTCACGACGACATGGCCCTTTACTCTGCTAGCGTCAAGCTTGAGGATGGGTGCGAGCTGAATACGGTGGATGAAATCGCTGCTGCTGTGAATCAATTAATGCGCAGAATCCAAGAGGAAGCGCCTTTCTGA 867 0.5433 MALEAVVFSQDPFSYSCCKDSYSFAAAWNLGKHGFHAEEEKAPVGVLISRNMEPRHGHATWDSNSSPDQARRSLVSPAPSGRRKRRRTKSAKNKDELENQRMTHIAVERNRRRQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGRKKKTKQQSETCSSPFAEFFTFPQYSTHANNGNTSTQQWAAADIEVTMVDTHASLKILSKKRSNQLTKIVVGLQALRLNVLHLNVSTHDDMALYSASVKLEDGCELNTVDEIAAAVNQLMRRIQEEAPF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0521 288 FunFam Basic helix-loop-helix transcription factor 90 165 - -
Alju08g0521 288 Coils Coil 147 167 - -
Alju08g0521 288 SMART finulus 105 156 IPR011598 GO:0046983
Alju08g0521 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Alju08g0521 288 MobiDBLite consensus disorder prediction 58 73 - -
Alju08g0521 288 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Alju08g0521 288 Gene3D - 89 178 IPR036638 GO:0046983
Alju08g0521 288 MobiDBLite consensus disorder prediction 55 100 - -
Alju08g0521 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 169 IPR036638 GO:0046983
Alju08g0521 288 CDD bHLH_AtFAMA_like 102 166 - -
Alju08g0521 288 PANTHER MAX DIMERIZATION, MAD 63 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0521 Alju-ChrAlju08 3725190 3726363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0521 1 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.333 1.87e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju08g0521 HLH 3.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2537 07 51094362 51095443 Alju08g0521 08 3725190 3726363 CCT
Alju08g0521 08 3725190 3726363 Alju08g0521 08 3725190 3726363 ECH