Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0517 ATGGCGCTACTTCATATCTCCTGCCTACCGTCAGCAGCCAATTTCTCCGCAGAACACCAACTCCGCCCGCTCTCTTCTCTCCATAGTCTTCCTCATCTCTCCGTCGCCAATCTCTCGTTTTGCCGCTCATCTTCCTCGTTTCATTTTCTGCGCCTGTACCTTGCGCATCCCTCAAACGATAGAACCAAAGACATTTCTCATTTTCTACCAATATTTGCCACTCCATCCCAAGAACAAGCGCAGACTTCCTCTCCTTCCAATTTTTCCGATGACAGCCAGCCAGCTGAGGCACAAACTGAAGAATTTTCTCGAACCAGGTTGCTTGCTCAAAACCTACCTTGGACCAGTACTCCTGAAGACGTTCGTTCTTTGTTCGAGAGGCATGGAAGGGTCCTAGACGTTGAGATATCGATGTACAATAAGACTAGAAACAGGGGTTTGGCGTTCGTTGACATGGCTTCGGAAGAAGAGGCTGTTGCGGCTTTGAATAGGCTCGAATCGTATGAATATGAAGGGCGTACATTGAGACTCGCATATGCTAGGCCGAAAAAGAAGAAAGATCCACCTCCTGTGCAGCAGAAGACAGTAACATTTAACATATTTGTTGCAAATTTGTCCTATGAAGCGAGGGCTAAAGATCTCAGGGAGTTTTTTGATTCAGGAAGTGGTAGTGTTGTTTCTGCCGAGGTTATATTTCATGACGACCCTAGAAAGTCCGCTGGTTATGGATTTGTATCATTCAAGTCTAAGAAAGAAGCTGAGGCTGCCCTTTCTGAGTTCCAAGGGAAGATTTTTATGGGAAGGCCAATCAGGGTGGCCCGTAGCAAGCAGTTTGTTAAACAACCGAACCGATTGACGCCATCTCACACTATTGATGTTGTGGTCTGCATTGGCATTGCATCCTTATAA 909 0.4631 MALLHISCLPSAANFSAEHQLRPLSSLHSLPHLSVANLSFCRSSSSFHFLRLYLAHPSNDRTKDISHFLPIFATPSQEQAQTSSPSNFSDDSQPAEAQTEEFSRTRLLAQNLPWTSTPEDVRSLFERHGRVLDVEISMYNKTRNRGLAFVDMASEEEAVAALNRLESYEYEGRTLRLAYARPKKKKDPPPVQQKTVTFNIFVANLSYEARAKDLREFFDSGSGSVVSAEVIFHDDPRKSAGYGFVSFKSKKEAEAALSEFQGKIFMGRPIRVARSKQFVKQPNRLTPSHTIDVVVCIGIASL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0517 302 SUPERFAMILY RNA-binding domain, RBD 189 283 IPR035979 GO:0003676
Alju08g0517 302 SUPERFAMILY RNA-binding domain, RBD 84 190 IPR035979 GO:0003676
Alju08g0517 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Alju08g0517 302 MobiDBLite consensus disorder prediction 79 102 - -
Alju08g0517 302 Gene3D - 72 185 IPR012677 -
Alju08g0517 302 Gene3D - 186 284 IPR012677 -
Alju08g0517 302 SMART rrm1_1 199 273 IPR000504 GO:0003723
Alju08g0517 302 SMART rrm1_1 106 178 IPR000504 GO:0003723
Alju08g0517 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 176 IPR000504 GO:0003723
Alju08g0517 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 271 IPR000504 GO:0003723
Alju08g0517 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
Alju08g0517 302 PANTHER OS02G0815200 PROTEIN 29 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0517 Alju-ChrAlju08 3699750 3701560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0517 105 277 Eukaryotic Initiation Factors Gene Family AT3G16380 30.435 1.49e-15 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0517 08 3699750 3701560 Alju08g0517 08 3699750 3701560 ECH