Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0499 ATGGAGCCCTCTGGTACAATATGTAGCTCTTATTACCTCCCTTATTCACGTGTTGATCCTACTGATTCCAATCACCTTTTTTGGCCTGCCATGAACCGGTCGAGTAATCATCATCAGCTTCAGCCTCTACCTCTACTGAGCAGCTTCCTCGGTTCAACTCCTTTTAGCTCAAAACCTTACCCCACGACAACGACGACTCATGATGATGATGCTGGTGAGGAGGATGTCACAGTAGCCTTACACATAGGACTTCCCCATAATCCCAGTACCGCTTCTTCAGGTCCAAATGGAGTCCTCAATGAAGCCCAAGTACCCAGGAATTACTGGATCCCAACCCAAGAACAAATCCTCATCGGATTCAGTCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTCAACCGCTACAATAACCTTCAGATGCATATGTGGGGACATGGGTCACAGTACCGAAGAGGACCAGAGTCGCTGAAAAGAACACATCCAAGGCCGTTGTTGGACATTCCATGTTATTGTTGCGCAAGAGGATGCAGGAACAACATAGAGCACCCGAGGGCTAAGCCTCTGAAGGATTTTAGGACACTGCAGACACATTACAAGAGGAAGCATGGAAGCAAGCCTTTTATGTGTCGCAAGTGTGGCAAGACACTGGCCGTGAAGGGAGACTGGCGAACTCATGAGAAGAATTGTGGAAAGCGTTGGCTTTGCGTCTGCGGCTCTGATTTTAAACATAAGAGGTCACTTAAGGACCATATCAAAGCATTTGGCTCTGCTCACTACCCTCTTTCTTCTTCCTCCGATGACATCTGA 807 0.4758 MEPSGTICSSYYLPYSRVDPTDSNHLFWPAMNRSSNHHQLQPLPLLSSFLGSTPFSSKPYPTTTTTHDDDAGEEDVTVALHIGLPHNPSTASSGPNGVLNEAQVPRNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDIPCYCCARGCRNNIEHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSAHYPLSSSSDDI 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0499 268 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Alju08g0499 268 SUPERFAMILY beta-beta-alpha zinc fingers 118 145 IPR036236 -
Alju08g0499 268 SMART c2h2final6 123 145 IPR013087 -
Alju08g0499 268 SMART c2h2final6 207 227 IPR013087 -
Alju08g0499 268 SUPERFAMILY beta-beta-alpha zinc fingers 189 227 IPR036236 -
Alju08g0499 268 PANTHER ZINC FINGER PROTEIN WIP2 32 262 IPR043584 GO:0003700|GO:0010468
Alju08g0499 268 Gene3D Classic Zinc Finger 185 259 - -
Alju08g0499 268 Gene3D Classic Zinc Finger 122 145 - -
Alju08g0499 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Alju08g0499 268 FunFam Zinc finger protein WIP2 176 258 - -
Alju08g0499 268 FunFam zinc finger protein WIP2-like 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0499 Alju-ChrAlju08 3579965 3580972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0499 27 260 C2H2 Transcription Factor Family AT1G34790 58.915 3.69e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju08g0499 None None None