Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0489 ATGGGAAGGTCTCCATGCTGTGATGAAAACGGACTTAAGAAAGGACCCTGGACTCCCGAGGAAGACGAAAAGCTTGTCCACTTCATTCAGAAACATGGCCATGGAAGCTGGAGAGCTCTCCCCAAACTTGCTGGTCTCAACAGATGTGGAAAGAGCTGCAGACTAAGGTGGACCAACTATTTAAGACCTGATATTAAGAGGGGCAAATTTTCTCAAGAAGAGGAGCAAACCATTCTCCACCTCCATTCTATCCTAGGAAACAAGTGGTCTGCAATTGCATCCCATCTTCCAGGCAGGACAGATAATGAGATTAAGAATTTCTGGAATACTCATTTGAAGAAGAAGCTGATTCAGATGGGCTTTGACCCAATGACGCATCAGCCAAGAACTGACCTTGTTTCAAGCTTGCCCTACCTTCTGGCTCTGGCCAACATGACTGACCTAATGGATCATCAATCACCCGATGAACAAGCCCTCAAGTTACAAGCAGAGGCGGTACAGTTGGCCAAGCTTGAATACTTTCATTATTTACTCCAATCCACAAGTTCCTTCACTCCTACCAACTCCTATGACCAGAGTGCCAGCATGGCTAACATGGAAGCCCTCAATTTGCTAACTTCAATGTCTAATGTCAACGAGAATAATGCAGTTATAATTTGCCCATCACAACTGGATAACGCGTCCTTATTTTCTAATGGGATTGCTGGCCCTCAACCACTCCACCACCCAAACATGTTATCATCTCAAATTTCAGACCCACAAGTCTCTTTCAATACTTCCCAGTCATGTATGAATAGTGAGAAGAATCAAGCAGGTACCAATAACTTTACAATAATAAGCGAAGGGGATAACATAGCCAATGATGACACTTCATGGATGATTCCGTCTATTCAGCCAACTGTGACGGCAGGGACCTCACCAAATAGCAATCCTGGAGACGCCAGCAGCCGCACGTCCAGCTATGAAGGAGGAACCTCATCTTATTGGCCTGAACTCTTTTTTGACGACCCACTTATACATGATGCATGA 1029 0.449 MGRSPCCDENGLKKGPWTPEEDEKLVHFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMDHQSPDEQALKLQAEAVQLAKLEYFHYLLQSTSSFTPTNSYDQSASMANMEALNLLTSMSNVNENNAVIICPSQLDNASLFSNGIAGPQPLHHPNMLSSQISDPQVSFNTSQSCMNSEKNQAGTNNFTIISEGDNIANDDTSWMIPSIQPTVTAGTSPNSNPGDASSRTSSYEGGTSSYWPELFFDDPLIHDA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0489 342 CDD SANT 69 112 IPR001005 -
Alju08g0489 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Alju08g0489 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju08g0489 342 CDD SANT 16 61 IPR001005 -
Alju08g0489 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju08g0489 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 270 - -
Alju08g0489 342 MobiDBLite consensus disorder prediction 298 323 - -
Alju08g0489 342 FunFam Transcription factor MYB39 69 130 - -
Alju08g0489 342 Gene3D - 69 116 - -
Alju08g0489 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju08g0489 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju08g0489 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju08g0489 342 FunFam MYB-related transcription factor 13 66 - -
Alju08g0489 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju08g0489 342 SMART sant 66 114 IPR001005 -
Alju08g0489 342 SMART sant 13 63 IPR001005 -
Alju08g0489 342 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0489 Alju-ChrAlju08 3514822 3516056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0489 1 339 MYB Transcription Factor Family AT1G34670 53.930 2.10e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju08g0489 Myb_DNA-binding 8.9e-17 CL0123