Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0473 ATGATGTCAGCTAACAGTAATCTGCAATTTCAGCCGGATCCCTTCAACGGTGAGCTCATGGAAGCACTTGAGCCTTTTATGAAAAGTGCTTCCACAACATCCTCACCCTCTCCATACACCCTATCATCTTCTTCGAATTGGTTTCTGCCTCCTCAACCTCCCTCTTCCAACTTCTTCCATTCCTCTCCAGTCCCTACACAGCCCAATTGGTTTGCAGGTGGTTACTCGCCATCGATGACCCATGTATTTTCCGACGGGTTAGTCAACAACCAAAACTTGATTGGTTTCGAGCAGCCAACTCTTCCTTTTGGGCTCAACAACCAGACTCTGTCTCAGACTGACCAGTTTCAACCTCAGATCCTTCACCAGAATCACCAAGACATGACCTTGAATCAAAATACCCTCAGCTTCTTGAGCCCCAAGCCTGTTCCCATGAAGCAGGTGGCTGCGCCTTCTAAGCCCACCAAGCTGTACAGAGGTGTCAGGCAGCGGCATTGGGGAAAATGGGTCGCCGAGATCCGTCTTCCCAAGAACCGTACCCGTCTCTGGCTCGGCACCTTCGATACTGCCGAAGAAGCTGCCCTGGCCTACGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCCAGGCTTAACTTCCCCAACCTCCGTCACCAAGGTTCCAGTATTGAGGGAGAATTCGGGGAGTACAAGCCTCTACATTCCTCCGTAGATGCAAAGCTTCAAGCAATTTGCGAAAGCATGGCTGAAATGCAGAAACAGGGGAAGTTGGAGAAGCCGAAGAGGTCTTCCGGGCGGTCCAAGTCAGGTTCCAAGGCCGCTCAGCCGCAGACGGTAACGTTCTCGGACGAGCAGGCGGTGGCTGGCGAAGCTGATCTGAAGGCGGTGGAGAACTCTTACGACAAGGTGGATACTTCCTCGTCTCCGGTGATGACTGAGAGTAGCGAGTCTGGTGATTCATCTCCTCTGTTAGATTTGACATTCGGCGATGTCAGTGAGCCTCAGTGGGAACGTATGGCAGAAGCTTTTAATCTGCAGAAGTACCCTTCTGAGATCGACTGGGCATCATTATTATGA 1077 0.5153 MMSANSNLQFQPDPFNGELMEALEPFMKSASTTSSPSPYTLSSSSNWFLPPQPPSSNFFHSSPVPTQPNWFAGGYSPSMTHVFSDGLVNNQNLIGFEQPTLPFGLNNQTLSQTDQFQPQILHQNHQDMTLNQNTLSFLSPKPVPMKQVAAPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSIEGEFGEYKPLHSSVDAKLQAICESMAEMQKQGKLEKPKRSSGRSKSGSKAAQPQTVTFSDEQAVAGEADLKAVENSYDKVDTSSSPVMTESSESGDSSPLLDLTFGDVSEPQWERMAEAFNLQKYPSEIDWASLL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0473 358 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Alju08g0473 358 MobiDBLite consensus disorder prediction 300 322 - -
Alju08g0473 358 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Alju08g0473 358 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Alju08g0473 358 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700|GO:0006355
Alju08g0473 358 MobiDBLite consensus disorder prediction 267 282 - -
Alju08g0473 358 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Alju08g0473 358 CDD AP2 156 216 IPR001471 GO:0003700|GO:0006355
Alju08g0473 358 FunFam Ethylene-responsive transcription factor 2 156 215 - -
Alju08g0473 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 357 - -
Alju08g0473 358 MobiDBLite consensus disorder prediction 251 282 - -
Alju08g0473 358 SMART rav1_2 157 220 IPR001471 GO:0003700|GO:0006355
Alju08g0473 358 ProSiteProfiles AP2/ERF domain profile. 157 214 IPR001471 GO:0003700|GO:0006355
Alju08g0473 358 MobiDBLite consensus disorder prediction 298 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0473 Alju-ChrAlju08 3399756 3400832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0473 2 358 AP2-EREBP Transcription Factor Family AT1G78080 51.047 8.95e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju08g0473 AP2 8.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2597 07 51549371 51550417 Alju08g0473 08 3399756 3400832 CCT
Alju08g0473 08 3399756 3400832 Alju08g0473 08 3399756 3400832 ECH