Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0449 ATGCCCCGCCGTCGCGTATGTTTTGCACTGTCCGTACAGATTTCTCTCTCGATCGTAGTGGGAGGGTCACGACGTTCACAAGTTGAGGTTTTTAAAGGAAAAGGAACTGAGCTGGCGAGTTTTAGGTTTGGTTCCTGTTTTGGTTTGGGGGATTTTCGTTGTTTGAAGATGAAGCCTTCTATGAGTTCTACATCAACTCAACTTGTCATCACAAAAAGGATGGGCATATATGAGCCATTCCAGCAAGTCAGCATGTGGGCGGACAACTTTAAAGTTGAAAATACCCTAAATTCAGGTCCTTCCCATATTTTCATGGTGAACCCTACCACAGAGCCTAAGGCTGAATATATTCCTCATGAATCAACTGGGCACTCAGGAGATGATCAAGAGACCAACACTGCTGTTAGCAAGGTGCTAAGACGCTTAGCACAGAATCGCGAAGCAGCTCGCAAAAGTCGTCAAAGGAAAAAGGCTTATGTCCAACAATTAGAAACTAGCCGTTTGAAGCTCATGCAATTGGAGCTAGAGATTGAGAAAGCAAAAAAGCAGGGTCTGTATATGGGCGGGGCATTAGATGCTACTTATACAGGATCACCTGCAACAATAAACCCAGGGATTGCAGCTTTTGAGATGGAATACAGTCAATGGGTTGAAGAGCAACACAGACAAAATGCAGAACTGAGAAACGCATTGCAAAATCAGTCATCTGATGTGCAGCTCCATCTACTGGTTGAGAGTAGCCTCAATCATTACTCAAATCTTTTCAGGATGAAAGCTGAAGCTGCAAAGGCTGATGTCTTCTACTTAATCTCTGGCGTTTGGAAGGCATCCGTCGAACGCCTCTTCCTCTGGATCGGTGGATCCCGCCCATCTCAGCTTCTCAATATCATCGTGCCACAAGTGGAGGGTTTGACGGATCAACAGATAGCGAGTTGCACCAAACTCCGGCAATCTTCTCAGCAAGCTGAAGATGCTCTTTCACAAGGACTGGATAAACTACAGCAGAATCTGGTCCTCAACACGACAGCCGACACATCAGATATAGGAAGCTTCGGGTTTCAGATCAACTCTCTCATGGAGAAAATTGAAGCACTAGAAGGTTTTGTAAGCCAGGCAGACCACCTTCGACAACAAACCTTGCAGCATATGTCTCGGATCCTGTCGGTCCGGCAAGCAGCTCAAGGCTTGCTGGTTTTCGGGGAATACTTTCAGCGTCTTCGTGCTCTTAGTTCCCTTTGGTCAGCTCGTCCAAGCGATCCTGCATTCCAAGCTTGA 1275 0.4635 MPRRRVCFALSVQISLSIVVGGSRRSQVEVFKGKGTELASFRFGSCFGLGDFRCLKMKPSMSSTSTQLVITKRMGIYEPFQQVSMWADNFKVENTLNSGPSHIFMVNPTTEPKAEYIPHESTGHSGDDQETNTAVSKVLRRLAQNREAARKSRQRKKAYVQQLETSRLKLMQLELEIEKAKKQGLYMGGALDATYTGSPATINPGIAAFEMEYSQWVEEQHRQNAELRNALQNQSSDVQLHLLVESSLNHYSNLFRMKAEAAKADVFYLISGVWKASVERLFLWIGGSRPSQLLNIIVPQVEGLTDQQIASCTKLRQSSQQAEDALSQGLDKLQQNLVLNTTADTSDIGSFGFQINSLMEKIEALEGFVSQADHLRQQTLQHMSRILSVRQAAQGLLVFGEYFQRLRALSSLWSARPSDPAFQA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0449 424 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 140 155 IPR004827 GO:0003700|GO:0006355
Alju08g0449 424 SUPERFAMILY Leucine zipper domain 137 170 IPR046347 GO:0003700|GO:0006355
Alju08g0449 424 ProSiteProfiles DOG1 domain profile. 206 416 IPR025422 GO:0006351|GO:0043565
Alju08g0449 424 SMART brlzneu 133 193 IPR004827 GO:0003700|GO:0006355
Alju08g0449 424 Coils Coil 156 183 - -
Alju08g0449 424 Pfam Seed dormancy control 225 298 IPR025422 GO:0006351|GO:0043565
Alju08g0449 424 Gene3D - 136 185 - -
Alju08g0449 424 FunFam BZIP family transcription factor 136 185 - -
Alju08g0449 424 PANTHER TRANSCRIPTION FACTOR TGA9 62 418 - -
Alju08g0449 424 Coils Coil 217 237 - -
Alju08g0449 424 Pfam bZIP transcription factor 137 167 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0449 Alju-ChrAlju08 3238519 3242735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0449 61 420 Calmodulin-binding Proteins AT5G65210 54.054 3.22e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Alju08g0449 DOG1 9.2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0449 08 3238519 3242735 Alju08g0449 08 3238519 3242735 ECH