Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0442 ATGCGTCCTTCAAAGTCACGTCAAGTTCATACCGCCCCGGTTCAGGGTTCCCGTCTGGCCCCTAATATCTGGCAAGCATGCGCCGGTGGATCCTTTCGAATACCTCCTCTTCATTCTAGGGTTTATTACTTCCCTCAGGGCCATATTGAGCATGCCTCGTCGGCTCCACTATACCTTAACCCTCTAATCTTCTACAGGCCCCTCATTCTCTGTCGCGTCTCCGCCATTGAATTTCTTGCTGACCCTGTCACTGATGAGGTATTTGCCAAGCTTTCGCTCCTTCCTTTGAGTGAACACAGCTCTGATCACTTTCCCGACTCCTTGGAAGCGCCGGACGATGACAAGATTGTGTCGTTTGCGAAGGTTCTGACGCCTTCTGACGCGAACAATGGCGGTGGATTCTCTGTTCCTAGGTACTGTGCTGAGACCATCTTTCCGCCTCTGAACTTCAAGGTCGAACGACCCAACCAGGTATTGCACGTGACGGATGTTCACGGTAATGTCTGGGACTTTCGCCACATTTATCGGGGCACGCCGAGGCGGCACTTGCTCACTACTGGCTGGAGCAAGTATGTCAATAGCAAGAAGTTGGTTGCTGGTGATTCGGTGGTTCTCATGAAGGATTCCAGCGAAAAGATGTTCATCGGGGTTCGCAGAGCTATGCGATCTGCTAAATTAACTGCCGTCGATTGCTCCATATGGTCTTCCCAGCTTGGTGGGGTGGGAAATAGGCCTGAGGGGGAGCAGCAGCAAGAGGGCCATGTAGGTTCCGGAGGGAAAGAAGGGGGGTTTTCTAGGAACGGGAAGGGGAAATTGTCTGCTAAGGAAGTTGCTGATGCTGCAGAATTGGCAGCGCAAAACATGCCATTTGAGGTTGTGTATTATCCAAGGGCGGGCTGGTCGGACTTTGTGGTGAAGGCGGAAGATGTGGAGAAAGCCTGGAATGTCGCATGGACTTCCGGACTGAGAGTTAAAATGGCAGTGGAGACAGAGGATTCGTCCCGGATCACATGGTTTCAGGGGACGGTATCTTCTGCATTTGTTCCTGATAATGGACTTTGGCGGAGTTCTCCATGGCGTATGCTTCAGGTTATGTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTGAGCCCCTGGGAGGTTGAACTTGTTTCCTCTGCACTTCCCCCTAATACAGTATTCCCTCCTGCAAAAAAGTTTAGAGCTGCTCAGTATTGTGGGGTGGCAACTGATAGAGAGGGAGACCCCCTCTTTTCTATTACAGGTTTGACTAATTCAACAATGAGGCACTCGAACCAATCATTGGTGAATTACAATACTGTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATCATCTGTCCCAAGTCTCTCCAACTTTGGAATTGGTAATTCTCATCTGTATATTGGTAATACATTTGGGAACATGGTACCGATGATGAGAACTTCTATGTCAACAGAGCCAAATACTGACAGTTCTCAGTCTAATAGCTTGTCACCAGAAAGCCAGAGTAGTTTGCAGGGCTCTGGCGCAGAACTTGCTGGGACACGAGGTTGCGTCTCAAGACAGGGGGCAAGTTCATTTCAATTATTCGGTAGGCTCATTCAGTTTGGACAGCCTGTTGAAAGTGGTTCCCATGCTCTTGGGGGCACGGCAGATGATGGTAGTAATGGCCGCAACGAGACTGAAGAAGGCGTTGACCAATGA 1716 0.5012 MRPSKSRQVHTAPVQGSRLAPNIWQACAGGSFRIPPLHSRVYYFPQGHIEHASSAPLYLNPLIFYRPLILCRVSAIEFLADPVTDEVFAKLSLLPLSEHSSDHFPDSLEAPDDDKIVSFAKVLTPSDANNGGGFSVPRYCAETIFPPLNFKVERPNQVLHVTDVHGNVWDFRHIYRGTPRRHLLTTGWSKYVNSKKLVAGDSVVLMKDSSEKMFIGVRRAMRSAKLTAVDCSIWSSQLGGVGNRPEGEQQQEGHVGSGGKEGGFSRNGKGKLSAKEVADAAELAAQNMPFEVVYYPRAGWSDFVVKAEDVEKAWNVAWTSGLRVKMAVETEDSSRITWFQGTVSSAFVPDNGLWRSSPWRMLQVMWDEPEVLQNAKRVSPWEVELVSSALPPNTVFPPAKKFRAAQYCGVATDREGDPLFSITGLTNSTMRHSNQSLVNYNTVPAGMQGARQDLSSVPSLSNFGIGNSHLYIGNTFGNMVPMMRTSMSTEPNTDSSQSNSLSPESQSSLQGSGAELAGTRGCVSRQGASSFQLFGRLIQFGQPVESGSHALGGTADDGSNGRNETEEGVDQ 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0442 571 Gene3D - 318 390 - -
Alju08g0442 571 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Alju08g0442 571 SMART B3_2 119 221 IPR003340 GO:0003677
Alju08g0442 571 MobiDBLite consensus disorder prediction 482 514 - -
Alju08g0442 571 MobiDBLite consensus disorder prediction 482 520 - -
Alju08g0442 571 MobiDBLite consensus disorder prediction 544 571 - -
Alju08g0442 571 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 541 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju08g0442 571 SUPERFAMILY DNA-binding pseudobarrel domain 103 226 IPR015300 -
Alju08g0442 571 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju08g0442 571 CDD B3_DNA 118 219 IPR003340 GO:0003677
Alju08g0442 571 MobiDBLite consensus disorder prediction 240 269 - -
Alju08g0442 571 Gene3D - 116 221 IPR015300 -
Alju08g0442 571 FunFam Auxin response factor 117 221 - -
Alju08g0442 571 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0442 Alju-ChrAlju08 3193547 3196787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0442 21 566 B3 DNA Binding Superfamily AT1G77850 48.201 4.68e-170 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju08g0442 B3 1.6e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2625 07 51825461 51828844 Alju08g0442 08 3193547 3196787 CCT
Alju08g0442 08 3193547 3196787 Alju08g0442 08 3193547 3196787 ECH