Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju08g0438 | ATGCTTAAGTGGTTATTTGGTTTTTCGCCGGTGATGACCGGAGGCCAATGTCACCGGAGGAAGAAGATGAAGTGCAGGGTTGCGGAAGGAGGTCGTGGAACCAAGGACATGCCTTGCCCGGTTTCGAGGGTTCCGGCTAAATCCCTTGGGACCCAACCGGGAAATTCTGATAACTCCCCTGCACTTGATATTGATTACTACTCGCAAGCCGTAAAAACGCTCAGTGAGCGCTCGCCTTTTGATGTCGCGGAAGAGACTTCAACCTCGACGGTGCCCACACTGCCCAGTGGGTGCGCAAGCTTCTTAAACCGCCATTCTGAGAGTCGTAGGCGCCACAAGAAGTCCCATTCGGGTGCGGACAAGAAATCCTCTAGAACAAGTGAGAAGTCGCGTAGTTCAAGCTTCTGGGTTGAGACTGAGGATTACTTTAGAGACTTGAAATTGCCAGACATAGACACCTTGTTGGAGGCATCATCCCCTTTTAGTTTAGCTGCTCGGAATTGTTTTTCTATTCCCCCAGCGGGAAATGCTAATAAGTCAAATGTAGCTAGTTACGAGGATGACAAGGAGACTGATGGAAACCGAACTAGCGAGGATGTTAAGAATAAGGACCGTGTCGTGAAAAGTAACAGTGTTGTAGCTGAAGTTTTGGCTCAGGTTGACAAGGGTCATGATACTTTTGATTCGTCTAGTAGTTTAGAACGGCTTTTAGGATGTAGGAATAAGACTTCTCTGATTTCTGAGCGCCCTTCAAAGAGGAGGAAGCTTTTGGGCGGTGAAGCTGGGTTGGAGAAATTCTTTATGGCCGGTCCTTGCGATGGAGACTCTCCTCTGTGCCATTATTGCTGCAGGGGAGACACCAGTAGAGAGTCCAATCAATTAATTGTCTGCGTTATTTGTAAAGTTGCAGTTCATAAGAAGTGCTATGGTGTGCAAGATGATGTAGACGAGTCTTGGTTGTGCTCTTGGTGCAAGCAGAAGGATGACGTTGATGAAATGGTGCATCCTTGTGTGCTTTGTCCGAAGAAGGGTGGTGCTTTAAAGCCTGTTCATAGACATGCGGAAAGTGTCGGGTCTGTGCAATTTGTTCACTTGTTTTGTTGTTTGTGGATGCCTGAGGTTTATGTAGAGGATCTGAAGAAGATGGAGCCTGTCATGAATGTAGGAGGAGTCCAGGAAACCCGGAAAAAATTAGTCTGTGATATTTGCAAGGTGAAGTTTGGTGCATGTATTCAATGTTGCCATGGATCTTGCAGGTCTTCTTTCCATCCTCTATGTGCTAGGGAAGCTAGCTACAGGATGGAGGTTTGGGCAAAAAATGGTCATGACAATATTCAGTTGCGGGTCTTTTGTTCCAAGCACTCAGATATACAAGATAACAGCACCATCTTGCCTTCAGGTGGCTCTGTAGCTTTTCATAGTGATTTGTCTTCTGCTGACAGCCTTCTGGCAAAAACACAGTGCAGTTTGAAAACTGTTTGCCACAACGGAGACAATATTGGGATATTTTCTGATGGCAGCCCTGATAAATTGAGTCATAGTGAACAGCAGGATGGAATGTTGTCTGATTGTCAGTTTAATGCTCACGGAACGTCAGAATGCAGTGGTTCACCACAACTAAGTAATACTGCAGTGGTGGGGAGGACCAATGAGATTGCCAATGCATCTGACTCCCTTGGTTTTGCACTTGTTTTGAAAAAGCTGATAGATCGAGGGAAAGTTGATCTTAAAGATGTGGCTTTGGAGATTGGCATTTCTTCAGAGACATTAAGCGCAAATATTAATGATTCTTGCATGGCCCCTGATGTGCAACTTAAAATAGTCAATTGGCTAAAAGCTCATATATCGGATTCTGAGTTGCCAGATCCTGTTGCTGTTAAGTCAGTGCCATCAAGGAGAAGAACAACTGGTAATATCAGAATTTTTAAAGATAACAAAGTGTTATGTTCATCTGGGATGGTGTCCTGTGAGAACGAAATGCCAATGGACAAGGTCAAAGGAGGTCAATCTGAACATGAAAATTCGGAAATATCAAATGAAGCATCCATTCCTGATGCAACTGAAATGGAATTAACCAAGTCTGAGGATGCTTCTTTTGATTTCCAAGGGAATGCAGACGAACCTAGCAAAATAAGCTTATCTGGAGGTGTTTTGGAAGATAAGATTGCTAATGCTTCTATTTTTTCTGATCATCACCATTCTTGTGCTGTTGCAGATTTACCTCCTTCAGGTGTCATGAAGATTGACGGGAAATCTTGTTACATTCACCCATTCATCCATAAAAAGTTATCGCAGATTCATGATGGGGTGCTTTCAAAGGATGTTTTATGTCAAAGGGAGGAACACAATTTTTATTTGGACGGATTCTTAGGGGCTAGTAGTGGCTCTAGTTACCAAAATCCAGAAGTAACTTGCAGTGACATTTGTAAGGCTGATAAAGTAAATACGAAGCAATTGGTTATGGCTAGAAATATGGGTTTATTAGAATCTTGTCCAAAAGATGAAGTGGAGGGTGAAATGATATATTTTCAGCATAGATTATTGCAAAATTCAGTTGCAAGGAAGAAGTTTGCTGACAATTTAATCTCTAGTATAGTTAAGAGTCTTCCGCAGGAGATTGATGCAACACATCAGCAAAGATGGGATGCTGTACTTGTTAACCAGTACCTCCGTGATCTCAGGGAAGCAAAAAAGCAGGGCAGAAAAGAGAGAAGACACAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCAGCATCATCATCTAGGGTTTCTTCCTTGCGGAAGGATGCCTTTGAAGAATCTGTACAGCCAGAGAATTTGTTGAAGCGCACTTTCAGTGGAAGGACTGGGGTTTGCTCTCTGCCAATGCCACGGACCAAAGAAACACCCTCAAGAGTAGCTATGGTTAGGACATCATCAGAAAAACATTCAGATTTTGGTATGGGAAATGCAGATTTTTCCAAGGAGCATCCCAAATTATGTGATATCTGTAGACGATCTGAAACTATATTGAACCCAATACTCGTCTGCTCCGGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTGTGAAGGAATTCACGGGTCCATGGTACTGTGAATTATGTGAAGATTTATCATTTAGAATATCTGGGCAGCCTTCTATAAATTCCTGGGAGAAACCTTATTTTGTTGCGGAATGTGGAATATGCGGTGGTACTACTGGTGCTTACAGGAAGTCTTCAGATGGTCATTGGGTCCATGCCTTTTGTGCTGAGTGGGTTTTTGAGTCGACCTTCAGAAGAGGGCAAGTAAATGCTGTTGAAGGAATGGGGACTGTGTTGAAAGGAGTAGACACTTGTTGCATCTGTCACCGCAAGCATGGTGTATGCTTAAAGTGTAGCTATGGCCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTTTACATGAATGTGAGGGCTGCCAGCGGCAAGCTGCAGCACAGGGCTTACTGTGAAAAGCATGGTTCAGAACAGAGGGCAAAGGCTGAAAGCCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAGTTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAGAAGATAAAGCGGGAATTGGTTCTGTGTTCACATGATATACTTGCTTTCAAAAGAGATCATGTTGCTAGGTCTGTCTTGGTGCATAGCCCTTTCATACTTCCTGATTGTAGTTCAGAATCAGCAACAACATCCCTTAAAGGGAACACAGAGGGATACAGGTCATGCAGTGAAGCTGTCCAAAGGTCGGATGATGTAACTGTGGACAGCTCGGTTTCTGCTAAGCATCGAGTACGAGTTGCTGTTACCATGGACAGTGATCCAAAGTTGGATGATGACTGTTCAACTTCGCAAAGCCATTATAATCATAAGATTCCTGAGAGGGTGCAGTTTTCTGGCAAGCAGATTCCTCAAAGAACTTCCATCATATCACGGAATCTTTCGGATGACAGCGGATGGAGATCAAAATCAAGAAAGCATCAAGAGACATTTGGAAAAGAGCTGGTTATGACGTCAGACGAAGCATCGATGAAGAATTCAATGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCTAGTGGTAAGCGATCCAAGCAGGATGTATTTACTAGCGAACCAGGGGAGCACAATGGGTAA | 4218 | 0.4362 | MLKWLFGFSPVMTGGQCHRRKKMKCRVAEGGRGTKDMPCPVSRVPAKSLGTQPGNSDNSPALDIDYYSQAVKTLSERSPFDVAEETSTSTVPTLPSGCASFLNRHSESRRRHKKSHSGADKKSSRTSEKSRSSSFWVETEDYFRDLKLPDIDTLLEASSPFSLAARNCFSIPPAGNANKSNVASYEDDKETDGNRTSEDVKNKDRVVKSNSVVAEVLAQVDKGHDTFDSSSSLERLLGCRNKTSLISERPSKRRKLLGGEAGLEKFFMAGPCDGDSPLCHYCCRGDTSRESNQLIVCVICKVAVHKKCYGVQDDVDESWLCSWCKQKDDVDEMVHPCVLCPKKGGALKPVHRHAESVGSVQFVHLFCCLWMPEVYVEDLKKMEPVMNVGGVQETRKKLVCDICKVKFGACIQCCHGSCRSSFHPLCAREASYRMEVWAKNGHDNIQLRVFCSKHSDIQDNSTILPSGGSVAFHSDLSSADSLLAKTQCSLKTVCHNGDNIGIFSDGSPDKLSHSEQQDGMLSDCQFNAHGTSECSGSPQLSNTAVVGRTNEIANASDSLGFALVLKKLIDRGKVDLKDVALEIGISSETLSANINDSCMAPDVQLKIVNWLKAHISDSELPDPVAVKSVPSRRRTTGNIRIFKDNKVLCSSGMVSCENEMPMDKVKGGQSEHENSEISNEASIPDATEMELTKSEDASFDFQGNADEPSKISLSGGVLEDKIANASIFSDHHHSCAVADLPPSGVMKIDGKSCYIHPFIHKKLSQIHDGVLSKDVLCQREEHNFYLDGFLGASSGSSYQNPEVTCSDICKADKVNTKQLVMARNMGLLESCPKDEVEGEMIYFQHRLLQNSVARKKFADNLISSIVKSLPQEIDATHQQRWDAVLVNQYLRDLREAKKQGRKERRHKEAQAVLAAATAAAASSSRVSSLRKDAFEESVQPENLLKRTFSGRTGVCSLPMPRTKETPSRVAMVRTSSEKHSDFGMGNADFSKEHPKLCDICRRSETILNPILVCSGCKVAVHLDCYRSVKEFTGPWYCELCEDLSFRISGQPSINSWEKPYFVAECGICGGTTGAYRKSSDGHWVHAFCAEWVFESTFRRGQVNAVEGMGTVLKGVDTCCICHRKHGVCLKCSYGHCQTTFHPSCARSAGFYMNVRAASGKLQHRAYCEKHGSEQRAKAESQKHGIEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFILPDCSSESATTSLKGNTEGYRSCSEAVQRSDDVTVDSSVSAKHRVRVAVTMDSDPKLDDDCSTSQSHYNHKIPERVQFSGKQIPQRTSIISRNLSDDSGWRSKSRKHQETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSSGKRSKQDVFTSEPGEHNG | 1405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju08g0438 | 1405 | ProSiteProfiles | Zinc finger PHD-type profile. | 276 | 327 | IPR019787 | - | |
| Alju08g0438 | 1405 | Coils | Coil | 1191 | 1211 | - | - | |
| Alju08g0438 | 1405 | MobiDBLite | consensus disorder prediction | 183 | 200 | - | - | |
| Alju08g0438 | 1405 | MobiDBLite | consensus disorder prediction | 77 | 103 | - | - | |
| Alju08g0438 | 1405 | ProSiteProfiles | Zinc finger PHD-type profile. | 994 | 1043 | IPR019787 | - | |
| Alju08g0438 | 1405 | MobiDBLite | consensus disorder prediction | 177 | 200 | - | - | |
| Alju08g0438 | 1405 | SMART | PHD_3 | 278 | 325 | IPR001965 | - | |
| Alju08g0438 | 1405 | SMART | PHD_3 | 996 | 1041 | IPR001965 | - | |
| Alju08g0438 | 1405 | SMART | PHD_3 | 1117 | 1171 | IPR001965 | - | |
| Alju08g0438 | 1405 | SMART | PHD_3 | 399 | 455 | IPR001965 | - | |
| Alju08g0438 | 1405 | Pfam | PHD-zinc-finger like domain | 336 | 454 | - | - | |
| Alju08g0438 | 1405 | Pfam | PHD-zinc-finger like domain | 1064 | 1170 | - | - | |
| Alju08g0438 | 1405 | CDD | ePHD | 1065 | 1170 | - | - | |
| Alju08g0438 | 1405 | ProSitePatterns | Zinc finger PHD-type signature. | 279 | 324 | IPR019786 | - | |
| Alju08g0438 | 1405 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 1062 | 1171 | IPR034732 | - | |
| Alju08g0438 | 1405 | PANTHER | PHD FINGER PROTEINS | 84 | 933 | - | - | |
| Alju08g0438 | 1405 | Pfam | PHD-finger | 1008 | 1041 | - | - | |
| Alju08g0438 | 1405 | Pfam | PHD-finger | 292 | 325 | - | - | |
| Alju08g0438 | 1405 | SUPERFAMILY | FYVE/PHD zinc finger | 987 | 1041 | IPR011011 | - | |
| Alju08g0438 | 1405 | ProSitePatterns | Zinc finger PHD-type signature. | 997 | 1040 | IPR019786 | - | |
| Alju08g0438 | 1405 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 334 | 455 | IPR034732 | - | |
| Alju08g0438 | 1405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1062 | 1173 | IPR013083 | - | |
| Alju08g0438 | 1405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 333 | 457 | IPR013083 | - | |
| Alju08g0438 | 1405 | Coils | Coil | 890 | 910 | - | - | |
| Alju08g0438 | 1405 | MobiDBLite | consensus disorder prediction | 30 | 62 | - | - | |
| Alju08g0438 | 1405 | SUPERFAMILY | FYVE/PHD zinc finger | 270 | 326 | IPR011011 | - | |
| Alju08g0438 | 1405 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
| Alju08g0438 | 1405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 972 | 1046 | IPR013083 | - | |
| Alju08g0438 | 1405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 332 | IPR013083 | - | |
| Alju08g0438 | 1405 | MobiDBLite | consensus disorder prediction | 77 | 131 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju08g0438 | 273 | 457 | C2H2 Transcription Factor Family | AT3G14740 | 30.159 | 7.37e-15 | 75.9 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Alju08g0438 | zf-HC5HC2H_2 | 1e-22 | CL0390 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Alju08g0438 | 08 | 3150971 | 3162603 | Alju08g0438 | 08 | 3150971 | 3162603 | ECH |