Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0425 ATGATGAGCAAACCCAGAAGCCAAAGGAAAGAATCCAAACATGTCAACCGAAAGCAGAATCAACAACCACCCCAGAAAACAGAGAAACAAGCCTCTTGGGCAACGATAAGAGGCCTATTGCCTTGTAGAAGTGTCCAAATTCAGCAGCCGCAGCTGGAAGTGAAACAACCAAAACAGAAACAAGAGCCAAGGAAGCTACAAGAACAAGAGGAAGAAGAAGAAGCAGCCACGGAAGAAAGCAGAAAGAAGTGCAAGAAAATGAGATGTTCTGGTTCACTCTGTAATAACACCAAGATCGTGGCAAAGCCTGAAACAGTGTCTCTTGACATGAACAAGGTCAAAAGGGCGTCGTCTCTGAGTGCAAGTAACACGGCCAACAATGATGCTTCTCATTCTAACAGATCCCTGAAAGCTCCTTTGAATGAACTGAATGGGGTGGTTACTTCTGCTTCTTCTTCAAACTCTTCTGTGAACGGTTCTTTTAGGGGAATGCCATTTAGGAGATTCTCTGGTTGCTATGAGTGTCGTATGGTGGTTGACCCACTTCTTCCTTTCACTAGAGACCCTTCTCTCAGGAGTAGCATTTACCCTTGCCCTCACTGTGGTGAGATCTTCATGAAACCTGAGAATTTAGAGCTTCATCAGGCTGTTAAACATGCAGTATCTGAGCTGGGTCCAGAAGATACGAGCAAGAACATAGTGGAGATTATATTCCACTCAAGCTGGCTAAAGAAACAATCTCCAGTCTGCAAAATAGACCGCATCCTTAAAGTCCTCAACACACAGAGGACAATAACCAAATTTGAAGAGTACAGAGAGTCCATCAAAGCCAAAGCCATGAAGCTTCACAAGAAGCACCCTCGTTGTATAGCAGATGGAAACGAGCTATTGAGGTTTCACTGCACGACCTCTTTGTGCTCACTGGGTCTAAAAGGCTCCACTAACCTCTGTAACTCAACACCACAGTGCAACGTGTGTGGCATAATCAAGAATGGCTTCAAGGTGGTCGCCGGAGGAAAAGAGATATTGACGACGGCGACAAGTGGCAAAGCACACGACAGAGCAGAGGTTTCAGGTGACGAGAATAATGAAAAGAGAGCAATGCTGGTATGCAGGGTAATAGCAGGGAGGGTGAAGAAGAATATAGAAGGAGGAGGAGGAATAATAAGTACGGAGGAGTATGATTCTTTTGCAGGGGAAGTTGGGGCTTATTCCAATTTAGAAGAGTTGTATGTGTCCAATCCTAGAGCTATTTTGCCTTGTTTTGTTGTTTTCTACTCTGGTTTTTGA 1290 0.4457 MMSKPRSQRKESKHVNRKQNQQPPQKTEKQASWATIRGLLPCRSVQIQQPQLEVKQPKQKQEPRKLQEQEEEEEAATEESRKKCKKMRCSGSLCNNTKIVAKPETVSLDMNKVKRASSLSASNTANNDASHSNRSLKAPLNELNGVVTSASSSNSSVNGSFRGMPFRRFSGCYECRMVVDPLLPFTRDPSLRSSIYPCPHCGEIFMKPENLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVLNTQRTITKFEEYRESIKAKAMKLHKKHPRCIADGNELLRFHCTTSLCSLGLKGSTNLCNSTPQCNVCGIIKNGFKVVAGGKEILTTATSGKAHDRAEVSGDENNEKRAMLVCRVIAGRVKKNIEGGGGIISTEEYDSFAGEVGAYSNLEELYVSNPRAILPCFVVFYSGF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0425 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 224 IPR013087 -
Alju08g0425 429 MobiDBLite consensus disorder prediction 1 17 - -
Alju08g0425 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 86 426 - -
Alju08g0425 429 MobiDBLite consensus disorder prediction 57 82 - -
Alju08g0425 429 Coils Coil 66 86 - -
Alju08g0425 429 Gene3D - 220 427 - -
Alju08g0425 429 SMART c2h2final6 196 219 IPR013087 -
Alju08g0425 429 ProSitePatterns Zinc finger C2H2 type domain signature. 198 219 IPR013087 -
Alju08g0425 429 MobiDBLite consensus disorder prediction 18 32 - -
Alju08g0425 429 MobiDBLite consensus disorder prediction 50 82 - -
Alju08g0425 429 MobiDBLite consensus disorder prediction 1 35 - -
Alju08g0425 429 SUPERFAMILY ADP-ribosylation 221 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0425 Alju-ChrAlju08 3045371 3046785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0425 161 426 C2H2 Transcription Factor Family AT1G75710 52.740 1.21e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju08g0425 None None None