Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0409 ATGTCTCTGAGCCCTCCTCGGCGAAGGACCAACGGCGAAGCCAGGACGAACCTGCTGCACTGGTGCTACCAGTGCAACCGAATGGTGCGTCTCCCTTCCACAGACACAACGGACATTGCCTGCCCACTTTGTTCAGGCCAGTTCCTCAGTGAAATCAACGTATCAAGGCCAAGACTAGTCTTGGATTTTACCCACCCGGATCCATCACCGGAAGCCCGTTTGCTAGAAGCCCTTTCTTTGTTGTTTGACCCGCCAATTAGGCACTTTGATGGCCGTCTCCACGATCCCCAAGCGCAACCTCCACGCTTCCGTTGGATTCAGGACCGAGACCGATCACGCCCCCAAGATGGCAGACGTCATGCCGACTCCGACGGGGAAATCCCCGTCCGTCGCGTAACTGGTCTGCGAAGTCGCCGGGCTCGGGATCCCGACGCAGATGTTCCAGAACCTGAAATTCTCCCTCGTCCTCGGACTTGGGTAATTCTTCCACCGATCGATCCATCTGACCCATTGGAATTGATTCCGCGGCGACAAATCCCTATACCGCGCGGTGTTGACCCGAGAGACTACTACTTTGGTCCTGGTTTGGGGGAACTTATTGACCAGCTGACGGAAAATGACAGGCCGGGAGCACCACCGGCGCCGGAGAGAGCTATCAATGCGATTCCAAGTGTGAAAATCTCGGAGAGCCATCTGAAGGAGAACTCGTACTGCCCGGTCTGCCAGGAAGAATTTGAACTGGGCGGTGATGCAAGGGAATTGCCATGCAAGCACATATACCATTCGGATTGCATTGTTCCGTGGCTAAGGCTTCACAATTCTTGCCCTGTTTGCCGGCTTGAGGTGCCGGTGCCAGAGTCTTCCGACTCCGGTGAAGACAGTGACGGAGAAGGCAGGCTGCGTAGGTGCTTGAGATGGAGTCGGATTCAACTGGCTTCTTTGTGGCCTTTCCACGGAAGGCATCCACGGATTCGTCCAGAAGCAGAGAATAATGAAATTGCTTCTGCAACGGGAGCTCGTGCAGGGCGGATCCCGTGCTGTATTCTTTAG 1050 0.5533 MSLSPPRRRTNGEARTNLLHWCYQCNRMVRLPSTDTTDIACPLCSGQFLSEINVSRPRLVLDFTHPDPSPEARLLEALSLLFDPPIRHFDGRLHDPQAQPPRFRWIQDRDRSRPQDGRRHADSDGEIPVRRVTGLRSRRARDPDADVPEPEILPRPRTWVILPPIDPSDPLELIPRRQIPIPRGVDPRDYYFGPGLGELIDQLTENDRPGAPPAPERAINAIPSVKISESHLKENSYCPVCQEEFELGGDARELPCKHIYHSDCIVPWLRLHNSCPVCRLEVPVPESSDSGEDSDGEGRLRRCLRWSRIQLASLWPFHGRHPRIRPEAENNEIASATGARAGRIPCCIL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0409 349 SUPERFAMILY RING/U-box 218 285 - -
Alju08g0409 349 MobiDBLite consensus disorder prediction 90 151 - -
Alju08g0409 349 Pfam Ring finger domain 237 279 IPR001841 -
Alju08g0409 349 FunFam E3 ubiquitin-protein ligase RING1-like 202 285 - -
Alju08g0409 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 125 283 - -
Alju08g0409 349 ProSiteProfiles Zinc finger RING-type profile. 238 279 IPR001841 -
Alju08g0409 349 MobiDBLite consensus disorder prediction 104 151 - -
Alju08g0409 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 285 IPR013083 -
Alju08g0409 349 Pfam zinc-ribbon 20 52 IPR039525 GO:0061630
Alju08g0409 349 CDD RING-H2_RNF126-like 238 279 - -
Alju08g0409 349 SMART ring_2 238 278 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0409 Alju-ChrAlju08 2918709 2919987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0409 210 317 C3H Transcription Factor Family AT1G68180 40.870 2.94e-24 97.8