Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0408 ATGGTAAAGAGAGGGCACAAGATCAACAGAGAGACATCATCAAAGGCAATGCAAGGTCAATCATCATCAGATGGGAAAAAGAAGTACAAGGGAGTGAGAATGAGAAGCTGGGGTTCATGGGTTTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTGGGGTCTTATTCAACCCCTGAGGCTGCAGCTCGAGCCTACGATGCTGCACTTTTATGCCTTAAAGGCTCTTCAGCTAATCTTAATTTCCCTTCAAGTTATTCGCACTATATTCCTCAAGACACAGCCATGTCTCCTAAATCAATCCAAAGAGTTGCTGCTGCTGCGGCTGCTGCGGCTGCTGCTAATAGTTTTGCTGATGAAAATGCCACAACCCCTGCCTTTGCCTCAACCTCGTCGTCCTCACTTGTCTCCTCCCCGTCAATGTCTTCCTCCGATCAAATCGACGATGATGCCTCACTAATCTCGTCGTTTGGTGGGGCCTACACTAGCTGTGATCAAACAAATGAGCCAGTCTCTTTGATGGACTCTTATTGGTACAGCTTTGATGATTTACAATCTCCAAAGTATGTGAATCAAATGCTCGGTGGTAATTTGTTTGATATTGATCCGACCCAGCTGCTGGATGATTTTTGCGAAGAAAGCGATATTCGTTTTCGACCTAACTATGTTTACATTAAGCATCACATCTACCGTGTTCTTCTTCTTTCTTTGATGCAACGAGCACATCTGTTCTTTTTGACGTCTCGTGCTAAGGAGAAGTTATGGGGTCCCATCCGCTCTGGTTCGTTTTACACTGGATCTGGACGGCTTAAGCGTAGAAGTTTGCAGAAGAAACGGGAGCTTTTGGTTTTGGTATTACGTGTTCAGAGATACGTAGGAACAGAAGCAGAGAATCTTCCCTTTCCTTTGACTATTCCCTGA 927 0.4466 MVKRGHKINRETSSKAMQGQSSSDGKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPSSYSHYIPQDTAMSPKSIQRVAAAAAAAAAANSFADENATTPAFASTSSSSLVSSPSMSSSDQIDDDASLISSFGGAYTSCDQTNEPVSLMDSYWYSFDDLQSPKYVNQMLGGNLFDIDPTQLLDDFCEESDIRFRPNYVYIKHHIYRVLLLSLMQRAHLFFLTSRAKEKLWGPIRSGSFYTGSGRLKRRSLQKKRELLVLVLRVQRYVGTEAENLPFPLTIP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0408 308 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 163 - -
Alju08g0408 308 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Alju08g0408 308 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Alju08g0408 308 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Alju08g0408 308 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Alju08g0408 308 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Alju08g0408 308 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Alju08g0408 308 FunFam ethylene-responsive transcription factor ERF014-like 27 87 - -
Alju08g0408 308 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Alju08g0408 308 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Alju08g0408 308 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0408 Alju-ChrAlju08 2915141 2917006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0408 29 218 AP2-EREBP Transcription Factor Family AT1G21910 52.941 2.38e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju08g0408 AP2 4.8e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0408 08 2915141 2917006 Alju08g0408 08 2915141 2917006 ECH