Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju08g0355 | ATGCTGCGGACGAATGCATTCGAAGGCGCGAATGTGTTCATGTCACGGAACCTCGTGCCGCCTGAAGTCTTCGACACACTTCACGACGCGCTTAAGAATAACGGCGCACGTGTCCACCTTTGCTGCGACCCTTCGCGCAATGGGCCTCACGACTATCACATCATATCTCACGATCATGAGAAACTTGAAGATCTTAAAGCCCGAGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAAAGACCTCTGCCTAAACAGGGTTTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTTGATATAGATGAGAAGATGAAGATAGGAGAGTTAGTAAATTCTATGGGAGGAATTCTGCATACTAAAGCGTCACTGGATGTAAACTTTGTGATTGTGAAAAATGTTTTAGCTGCCAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATAATCACTTTTAATTGGTTAAAGCAATGCTCTATTGAGCATCGTATTGTTCCTCAAGAGTCATACAGGATTCTTCCCTTTTCTGGCTTGACAATTTGTGTTACCCGAATTCCAGCAGATGAGCGCAGAAAAATTGAGATGCTTATTGTACAGAATGCTCCTGAAGGCGACAAATATAAGGTGGCAAAACGATGGGGTCACATTCATATTGTGACTAAGAAATGGTTTGATCAGTCTATTGCCAGAAGAGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGCATGGACCTGTATCTTCACAAAGAATGTCTATGGATAATTTAACAGCACAACATAGTCAGGAAAAGAAATATGGGAACTTGCAATCTGCAGCATCATCTGGACTTCCAGATTCACGTATGCCTCTTTCCTATGCTGAGTTTGTGGAAGGAGATCCAGATGCTACACAGTCAGAAAACACTTCTGCTGCCATTTTAGATGTTCCTATCTCTGTTAATGGGACAGATCCTGAAGTGCCTCCAGTGCAACCCAAAAATGAACCAAACCTTGACAGTGCTGTAGCCAGAGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCCGAATATCACTTGTTGGCTTTGAAGCTTCTGAAATGCGTAAACTAGTTAATATGGTTCGTAAAGGAGGAGGATCCAGATATATGTCTCTTAATGACAAGTTGACACACATAATCATTGGAACCCCTTCGGAAATAGAAAAGAAGGATGTAAGGAGCCTTGCTGCTTTGGGTATCATCTACGTTGTTAAGACTATATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTTCTTAAGAGACACATTGCACATGATCTTCTTCTTCCAAAAGGTTCGGTATCTTCTGTGAAAGGAGCTGTAACGGGCATTATGGGCTTGAATAAGGGTAAAGACCCCAGCACTCATCAAAGCTTGCAAGCTGATCCGGTGATAACTGGTATGAACTCTAGAGTTGTAATGCCATTATCTGTGGAGAAAAAAGAAGAGAAGAAGCCGGAGAATGATGTGACTGATCAAACCTTTCTTAAATCAATGGACAAGTCGACACAGCAAACGCAACTTCCTGTCGTTAATAATAAAATGAAGGGTCAAAAGAAGATGCATAATGAATCTTCTCAGTGTGTAAAGTCATCAGCTGTTTTCTGGGGAAGGACGTTTTGTTTTTCAAATTCTTTTCCTGAAGAGAGAAGAGATGAGATTATTCAATGGATAAGTCAAGGGAAAGGAGAAATGGTAAATGGGCGCAGAAAACAGAATGCCCACTATACTATTGAGTGTCACGGTGTAACAAGGAGGTGGGAAGAAATTTCCCAAACTAGATATATTTCCAGTCATTGGATACGATCTTGCTTAGAGAATGACTGCTTGCTGGATGTTGATGGTCACATTCTTTATTCTCCACTCCCTTGCCGTATACCCTTGTCTGGCTTTGAGAGCTTTCGTTTTTGTGTTTCTCAATATGAGGGGAGAGATAGAATGCTGCTAAGGAACTTGTGCTTTGTTCTTGGAGCTACATTTGTCGAGAAGCTGACGAAGAAAGTTACTCATTTATTGTGTAAATTCGTCAATGGGCCCAAGTATGAGGCTGCTTGTAAGTGGGGGATCCAGGTGGTTACTTCTGAATGGATATTTGAATGTGTCAAACAGAATAAAGTTGTTGCTGTTGATCAATTTTTACCCAAAGAAGTCTCTGTTCAAGATCAAGAGAACCAAGAGGCAGGAGTTTTTACTGTGAGTCAATTTCCTAACCCGGCTGACAGCATAAGTGGAGATGGCTCTGCCCAGTATTCAAGTCGATCACAAAATTTGAGAAACATACCAAATCAAAATGTAGGTAGTCAAATCGACAATTATGGGCTTGATGCTAAAATATCAAGTGTTTACTGCAAAAAGGCAAGGCTTTTGGAAGAGTCTGGCCTGTATGATACAGTGCTTTCTGCTGTAGCCTCAGCTACCCCTATCAACGATATGAGTTCTACAGGAAACAATATGCTGATAGATACCGGTGAGGTTTCCCTGGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAAACTAACAAGATGCATGATCAGACATCCCCAGGGAAGACCGTGAATAAGGGAAATAATTTTTCGTCTGATTGTTCTGTTCTTGGTGAAAACCAATTAAATCCTCATACTGTCATTGGATTTTCTGAACACTGGCTGAACAGAAGTAGCAGAAATGAGGATAATGATGATGCTTCTCGAGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCTGGAAGACAAATGCTCATCGACAGAGTCCGAACACGTGGCAGCATGGCTTGA | 2901 | 0.4168 | MLRTNAFEGANVFMSRNLVPPEVFDTLHDALKNNGARVHLCCDPSRNGPHDYHIISHDHEKLEDLKARGCNLLGPQCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFDIDEKMKIGELVNSMGGILHTKASLDVNFVIVKNVLAAKYKWALNMLKKPIITFNWLKQCSIEHRIVPQESYRILPFSGLTICVTRIPADERRKIEMLIVQNAPEGDKYKVAKRWGHIHIVTKKWFDQSIARRACLNEESYPVQHGPVSSQRMSMDNLTAQHSQEKKYGNLQSAASSGLPDSRMPLSYAEFVEGDPDATQSENTSAAILDVPISVNGTDPEVPPVQPKNEPNLDSAVARDSESDDNDLYLSECRISLVGFEASEMRKLVNMVRKGGGSRYMSLNDKLTHIIIGTPSEIEKKDVRSLAALGIIYVVKTIWLEDCDREKKEVPVLKRHIAHDLLLPKGSVSSVKGAVTGIMGLNKGKDPSTHQSLQADPVITGMNSRVVMPLSVEKKEEKKPENDVTDQTFLKSMDKSTQQTQLPVVNNKMKGQKKMHNESSQCVKSSAVFWGRTFCFSNSFPEERRDEIIQWISQGKGEMVNGRRKQNAHYTIECHGVTRRWEEISQTRYISSHWIRSCLENDCLLDVDGHILYSPLPCRIPLSGFESFRFCVSQYEGRDRMLLRNLCFVLGATFVEKLTKKVTHLLCKFVNGPKYEAACKWGIQVVTSEWIFECVKQNKVVAVDQFLPKEVSVQDQENQEAGVFTVSQFPNPADSISGDGSAQYSSRSQNLRNIPNQNVGSQIDNYGLDAKISSVYCKKARLLEESGLYDTVLSAVASATPINDMSSTGNNMLIDTGEVSLAVPDVAAAIEDLLEQTNKMHDQTSPGKTVNKGNNFSSDCSVLGENQLNPHTVIGFSEHWLNRSSRNEDNDDASRDGRAAYDNFSETQTESQVVGYEEDLSGRQMLIDRVRTRGSMA | 966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju08g0355 | 966 | MobiDBLite | consensus disorder prediction | 930 | 944 | - | - | |
| Alju08g0355 | 966 | Gene3D | BRCT domain | 185 | 256 | IPR036420 | - | |
| Alju08g0355 | 966 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 8 | 964 | - | - | |
| Alju08g0355 | 966 | CDD | BRCT_TopBP1_rpt2_like | 654 | 727 | - | - | |
| Alju08g0355 | 966 | CDD | BRCT | 102 | 169 | - | - | |
| Alju08g0355 | 966 | ProSiteProfiles | BRCT domain profile. | 654 | 737 | IPR001357 | - | |
| Alju08g0355 | 966 | SMART | BRCT_7 | 96 | 173 | IPR001357 | - | |
| Alju08g0355 | 966 | SMART | BRCT_7 | 651 | 727 | IPR001357 | - | |
| Alju08g0355 | 966 | SMART | BRCT_7 | 4 | 85 | IPR001357 | - | |
| Alju08g0355 | 966 | SMART | BRCT_7 | 555 | 631 | IPR001357 | - | |
| Alju08g0355 | 966 | SMART | BRCT_7 | 356 | 436 | IPR001357 | - | |
| Alju08g0355 | 966 | ProSiteProfiles | BRCT domain profile. | 553 | 641 | IPR001357 | - | |
| Alju08g0355 | 966 | ProSiteProfiles | BRCT domain profile. | 202 | 252 | IPR001357 | - | |
| Alju08g0355 | 966 | MobiDBLite | consensus disorder prediction | 912 | 928 | - | - | |
| Alju08g0355 | 966 | Gene3D | BRCT domain | 45 | 93 | IPR036420 | - | |
| Alju08g0355 | 966 | CDD | BRCT_TopBP1_rpt2_like | 185 | 242 | - | - | |
| Alju08g0355 | 966 | Gene3D | BRCT domain | 651 | 755 | IPR036420 | - | |
| Alju08g0355 | 966 | FunFam | Transcription coactivator | 336 | 446 | - | - | |
| Alju08g0355 | 966 | Pfam | twin BRCT domain | 658 | 719 | IPR001357 | - | |
| Alju08g0355 | 966 | SUPERFAMILY | BRCT domain | 557 | 643 | IPR036420 | - | |
| Alju08g0355 | 966 | Gene3D | BRCT domain | 550 | 647 | IPR036420 | - | |
| Alju08g0355 | 966 | Gene3D | BRCT domain | 97 | 184 | IPR036420 | - | |
| Alju08g0355 | 966 | FunFam | Transcription coactivator | 96 | 184 | - | - | |
| Alju08g0355 | 966 | Gene3D | BRCT domain | 340 | 443 | IPR036420 | - | |
| Alju08g0355 | 966 | SUPERFAMILY | BRCT domain | 352 | 440 | IPR036420 | - | |
| Alju08g0355 | 966 | SUPERFAMILY | BRCT domain | 185 | 253 | IPR036420 | - | |
| Alju08g0355 | 966 | ProSiteProfiles | BRCT domain profile. | 99 | 183 | IPR001357 | - | |
| Alju08g0355 | 966 | FunFam | Transcription coactivator | 550 | 647 | - | - | |
| Alju08g0355 | 966 | MobiDBLite | consensus disorder prediction | 323 | 350 | - | - | |
| Alju08g0355 | 966 | SUPERFAMILY | BRCT domain | 58 | 183 | IPR036420 | - | |
| Alju08g0355 | 966 | Pfam | BRCA1 C Terminus (BRCT) domain | 356 | 432 | IPR001357 | - | |
| Alju08g0355 | 966 | ProSiteProfiles | BRCT domain profile. | 354 | 446 | IPR001357 | - | |
| Alju08g0355 | 966 | SUPERFAMILY | BRCT domain | 651 | 738 | IPR036420 | - | |
| Alju08g0355 | 966 | MobiDBLite | consensus disorder prediction | 912 | 946 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju08g0355 | 1 | 966 | Core DNA Replication Machinery Family | AT1G77320 | 48.926 | 0.0 | 890 |