Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0349 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTACTCGAAGAGGAAGAATGGAATCCTAAAGAAGGCAAATGAAATTACTGTTCTATGCGATGCCCAGGTTTCCCTTATTATCTTTTCTTCATCTGGGAAGATGCATAACTACATCAGCCCTTCTACCACGTTGATTGACATCCTGGACAGGTATCAGAGAACGTCTGGGAAGACGCTCTGGGACGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGAATCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGGGAGGATATAACGTCACTGAATTACAAGGAGCTGATGGGATTGGAGGATGCTCTTGAAAGCGGTCTCAAAGGAGTCCGCGAGAAACAGATGGAAGTGCACAGGAGGTTTAGGAGAAATGGCAAGATCTTGGAGGAGGAAAATAGGGAGCTCAATTTCCTGCTGCAACAGCATTTGGCAGTGGAAGGTGTGAGAGACGTGGACAATGGGTTTGATCAGAGCATTAGGGATTTCAATTCTCAGATGCCTCCATTTGCCTTTCGCGTGCAGCCCCTTCAGCCAAACCTTCAAGAGAGGATGTAG 630 0.4635 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKANEITVLCDAQVSLIIFSSSGKMHNYISPSTTLIDILDRYQRTSGKTLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLNYKELMGLEDALESGLKGVREKQMEVHRRFRRNGKILEEENRELNFLLQQHLAVEGVRDVDNGFDQSIRDFNSQMPPFAFRVQPLQPNLQERM 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0349 209 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Alju08g0349 209 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju08g0349 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju08g0349 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju08g0349 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju08g0349 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju08g0349 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Alju08g0349 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju08g0349 209 Coils Coil 77 111 - -
Alju08g0349 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju08g0349 209 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Alju08g0349 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju08g0349 209 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Alju08g0349 209 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0349 Alju-ChrAlju08 2531752 2533649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0349 1 143 MADS-box Gene Family AT5G20240 70.629 7.62e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju08g0349 K-box 1.3e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0349 08 2531752 2533649 Alju08g0349 08 2531752 2533649 ECH