Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0348 ATGGGAAGAGGAAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTACTCAAAGAGGAAGAATGGGATCCTGAAGAAGGCCAAGGAAATTACTGTTCTATGCGACGCCCAAGTTTCCCTCATTATCTTTGCTGCTTCTGGAAAAATGCATGAATACATCAGCCCTTCAACCACGTTGATTGACATCCTAGAAAGATATCACAAAACATCTGGGAAGAGGCTCTGGGACGCTAAGCATGAGGACTTAAACAGCGAAATTGATACACTCAAGAAAGAGAATGACAGCATGCAGATTGAGCTCAGGCACTTGAAGGGAGAGGATGTGAACACGCTCAATTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAATGTGGCCTCGCCGGTATACGCGAGAGACAGGCAAATCTCATCCCTATATTTAGACTATATATTATCATTTTTAAGGCACACAGGAGAAATGGCAAGATCTTGGAGGAAGAGAACAGGGAGCTTAATTTTATACTGCAACAACGTTTGGCAATGGAAGGAGCGAGAGAAATGGAGAATGGATTTGATGAGAGCATCCTTCCTAACGGCCTGCGAATTTTTCCGGGTTCGTGTGTGGGACTTGTGACGAGGCGCATAGGCCGAAAGGGTCTATTCAACGTGGAATCGATCATCAGAAGGAACCCTTCCGTATCATCGCCCTCAAACCGTTTTGGTGTCACCACCATCCCGTCTCTCTCCCTCTGCCGCGAGTTACGCGCACCCAAGCCCATACTTCTCTCTGCGAGGATCGGAGGGAGAAAATATTTCGTATTATATAGACCATTGTTGAAACGAACAAGCTTCCGTGTTCTATCTCTCATTCTGCGCAGCCAAGTACCCTTCAGCATTGCCTTGTTGAGTTTTTGA 912 0.4616 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHEYISPSTTLIDILERYHKTSGKRLWDAKHEDLNSEIDTLKKENDSMQIELRHLKGEDVNTLNYKELMALEDALECGLAGIRERQANLIPIFRLYIIIFKAHRRNGKILEEENRELNFILQQRLAMEGAREMENGFDESILPNGLRIFPGSCVGLVTRRIGRKGLFNVESIIRRNPSVSSPSNRFGVTTIPSLSLCRELRAPKPILLSARIGGRKYFVLYRPLLKRTSFRVLSLILRSQVPFSIALLSF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0348 303 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju08g0348 303 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju08g0348 303 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju08g0348 303 Pfam K-box region 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju08g0348 303 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Alju08g0348 303 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Alju08g0348 303 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Alju08g0348 303 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju08g0348 303 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Alju08g0348 303 Coils Coil 77 111 - -
Alju08g0348 303 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju08g0348 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju08g0348 303 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju08g0348 303 ProSiteProfiles K-box domain profile. 84 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0348 Alju-ChrAlju08 2523586 2529195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0348 1 139 MADS-box Gene Family AT5G20240 66.906 5.86e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju08g0348 K-box 1.7e-17 No_clan