Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0339 ATGGAAACTGAGGATGGAACAAGCAATGGGGATAACACAGAATGTTCTGAGGCGTTTCAGTGCCTGAAGAGTGATACTGTAAATAATGGGGTTGCAGATAGCAATGATGTTAAAAAAGGGGTTCAGCCCTTTAATTGTGAAGCTGTGAATAATGGGGTGGTAATAGCAGACAGGATCGATGTTGCTCAAGGGGACTCTGGTGTAGTTGAAAGCTTTCGAACTTACAAGAGACGGAAGCATGTAAAGTTGAATTCAGAAAGCAAAGCTCACGAAGATTGCAGAACATACTCAGAAGCTGCAAGTCACATGGATGTAAAGAAATCATGTAATGTAGCTGTAGGAAATACTTTGGATAAGAATTCACATGCTCATTGGGGAAATGTTGTACTAATGCATTTGTATCAGTCATTAGGTGATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCTCTCATGCGCTATCCTAAAATTAGTTGTGCCACTACTTTAAAGGAAACATGTAAAGTTGACAAAGTTGGACAAGATTACTCTCCACACTTTGAGCCAATGCCTCATAGATTACAGAAGGAAGTTAATGGGCATGCAAATGGCTTGTGCAATGGATCTTATAATGAGTCAGATGGCCCTAACACAAATGAGATGTGTCGGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTGTGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTACTTGACTTTAGTGTCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCACCCACACTTTTTTTGTCAGACGTTGAACAGGTTTGGAGAAAACTTCAAGACGCTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATGTCAAGAACTTTCTACTGCGAGCAGGCTGGAATTTCAGTGCATAGCACATTCAAAGATGGAAAACAGGAGTTCTGTAATCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAAATGGCGGCATGTATAAGATCTGCACTTGCAGGCATTGTGGAAACAAAGCAGATGGGAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTTCCATATCTCCTGTATTGATCCTCCCGTCAAAGAGATACCCCACAAGAGCTGGTACTGTGTCAAATGCACTGCTAGTGGAATCGTGTCTGCACATGAAAGTTGTGTGGTATGTGAAAGGTTGAATGACTCAAAGACCCTGAACTTTGATGAAAGCTTCCCTGAAAATGAGGAAACAATCAATGAATTTGAAGAGAATTCATATTTCTCCCATGATGGGGCTCAAGCATCTGGAAGGGAGGAAATTGACACGACCTGCAAAGTTTGTAAAAATGAAGTGGATGGTGAAAGAATTAAAATCTGTGGTCACCCCGCCTGCTCGAAAAGGTATCATGTAAGGTGTTTGACAAGTAAACAATTAACATCATACAGTCCCCGTTGGTACTGCCCTTCTTGCTTATGCCAGGTTTGTCTCACTGATAAAGATGATGGTCAGATTGTTCTCTGTGATGGCTGTGATGATGGATACCACATATATTGCATGAAACCTCCCCGAACTTCTATTCCCAAGGGAAAATGGTTCTGCAGGAAATGTGATACGGGGTTACAAGTAATACAACAGGCGAAAAAGTTATATGAGAGTAAAAAGCAGCGAAAAACAAGTGAAGATGGTTCAAAACCAAGTGATAGATTTGAAAAAAATTGGAATGGTAAACATGGACGAGATTTGGATAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAAGAGGACTTGGCTGCAATCCGGATGTAG 1857 0.4103 METEDGTSNGDNTECSEAFQCLKSDTVNNGVADSNDVKKGVQPFNCEAVNNGVVIADRIDVAQGDSGVVESFRTYKRRKHVKLNSESKAHEDCRTYSEAASHMDVKKSCNVAVGNTLDKNSHAHWGNVVLMHLYQSLGDDKGGIEGCMREALMRYPKISCATTLKETCKVDKVGQDYSPHFEPMPHRLQKEVNGHANGLCNGSYNESDGPNTNEMCRRVLCNVLVSEKFSSLCKVLLENFKGMKPETVLDFSVINSRLKEQAYEQSPTLFLSDVEQVWRKLQDAGNEIVSLAKGLSNMSRTFYCEQAGISVHSTFKDGKQEFCNQESDSHMKPEQTENGGMYKICTCRHCGNKADGKDCLVCDSCEEMFHISCIDPPVKEIPHKSWYCVKCTASGIVSAHESCVVCERLNDSKTLNFDESFPENEETINEFEENSYFSHDGAQASGREEIDTTCKVCKNEVDGERIKICGHPACSKRYHVRCLTSKQLTSYSPRWYCPSCLCQVCLTDKDDGQIVLCDGCDDGYHIYCMKPPRTSIPKGKWFCRKCDTGLQVIQQAKKLYESKKQRKTSEDGSKPSDRFEKNWNGKHGRDLDKGGGMDMLLTAANTLNLEEDLAAIRM 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0339 618 SUPERFAMILY FYVE/PHD zinc finger 343 392 IPR011011 -
Alju08g0339 618 SMART PHD_3 453 501 IPR001965 -
Alju08g0339 618 SMART PHD_3 346 392 IPR001965 -
Alju08g0339 618 SMART PHD_3 504 547 IPR001965 -
Alju08g0339 618 ProSiteProfiles Zinc finger PHD-type profile. 344 394 IPR019787 -
Alju08g0339 618 MobiDBLite consensus disorder prediction 561 590 - -
Alju08g0339 618 Gene3D - 254 395 - -
Alju08g0339 618 Pfam PHD-finger 347 393 IPR019787 -
Alju08g0339 618 Pfam PHD-finger 502 547 IPR019787 -
Alju08g0339 618 PANTHER OS02G0192300 PROTEIN 214 407 - -
Alju08g0339 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 548 IPR013083 -
Alju08g0339 618 FunFam PHD finger protein EHD3 isoform A 234 395 - -
Alju08g0339 618 ProSiteProfiles Zinc finger PHD-type profile. 499 549 IPR019787 -
Alju08g0339 618 ProSitePatterns Zinc finger PHD-type signature. 497 546 IPR019786 -
Alju08g0339 618 ProSiteProfiles Zinc finger PHD-type profile. 451 503 IPR019787 -
Alju08g0339 618 ProSiteProfiles Zinc finger RING-type profile. 454 500 IPR001841 -
Alju08g0339 618 SUPERFAMILY FYVE/PHD zinc finger 446 504 IPR011011 -
Alju08g0339 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 500 IPR013083 -
Alju08g0339 618 SUPERFAMILY FYVE/PHD zinc finger 501 551 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0339 Alju-ChrAlju08 2466350 2472503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0339 501 567 C2H2 Transcription Factor Family AT3G01460 43.284 9.44e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju08g0339 PHD 5.7e-14 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0339 08 2466350 2472503 Alju08g0339 08 2466350 2472503 ECH