Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0307 ATGGAGGATTCTTCTTCATCTGCTGTTGAGGACACCAAGACTTGCCCTCGCGGTCACTGGAGACCCTCCGAGGATGAGAAACTCCGGCAACTTGTCCAACAATATGGTGCCCAGAACTGGAATTCAATCGCCGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCTAGGATTAACAGGAGGCCATTTACAGAAGAGGAAGAAGAGAGGCTACTGGCAGCTCATCGCATCCATGGGAATAAGTGGGCACTCATAGCAAGGCTTTTCCCAGGTCGTACTGATAACGCTGTGAAGAATCATTGGCATGTTATAATGGCGCGCAAGCAAAGAGAACAATCTAAGTTATGTGGCAAGAGAAGCTTTCAAGATGTTTATAACTATAATGATTCTAATTATAGTATTAGTTCCTGCAAGAACATTACATCAAATTCTTATCTTAGCTCCAGAATGAGTGGGTTAGAGAATGCCAGATTCTTTGATTTCCGTAACCTTGATCATCATAAAGATAGAATATTATTTGCCGATTCTCCCTCCACTTCTTTGGCTTCCTGGAGTTTTGCAACCTCCTTATCAAACGGTTCTCCTGTGGCGGGTTCATTTAGAAGAGAAGGCAGAGATTTCTTCAATTCTCATTCAAATCATTGCATATCGGAAGTAGCCAAAGGTTCAGATAGGTTTCATTACAGAATTTATCCGAATTCTTCAGCAAGTTACAGGAGAGTCGTCCCATCAGTAAGTGCTTTTGGACTTTTTGGTTCCGGTGATGATGGAAAGACAAAAAGGGACTTCACCAATTTCTGTGATAGCTCGGAACTCACCAGGTTACGGGCTTCTACGGATCAGCGAGGGCAAGAAGATGACGAGCCAGTCGAACACAAAGAAGTTCCTTTTATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA 954 0.4308 MEDSSSSAVEDTKTCPRGHWRPSEDEKLRQLVQQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNYNDSNYSISSCKNITSNSYLSSRMSGLENARFFDFRNLDHHKDRILFADSPSTSLASWSFATSLSNGSPVAGSFRREGRDFFNSHSNHCISEVAKGSDRFHYRIYPNSSASYRRVVPSVSAFGLFGSGDDGKTKRDFTNFCDSSELTRLRASTDQRGQEDDEPVEHKEVPFIDFLGVGVSSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0307 317 FunFam MYB transcription factor 70 140 - -
Alju08g0307 317 PANTHER MYB PROTEIN-RELATED 17 153 - -
Alju08g0307 317 CDD SANT 71 111 IPR001005 -
Alju08g0307 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 63 IPR017930 -
Alju08g0307 317 ProSiteProfiles Myb-like domain profile. 17 63 IPR001005 -
Alju08g0307 317 CDD SANT 20 61 IPR001005 -
Alju08g0307 317 Gene3D - 71 131 - -
Alju08g0307 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Alju08g0307 317 FunFam MYB transcription factor 17 68 - -
Alju08g0307 317 SMART sant 16 65 IPR001005 -
Alju08g0307 317 SMART sant 68 116 IPR001005 -
Alju08g0307 317 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Alju08g0307 317 Pfam Myb-like DNA-binding domain 20 80 - -
Alju08g0307 317 MobiDBLite consensus disorder prediction 1 23 - -
Alju08g0307 317 Gene3D - 17 68 - -
Alju08g0307 317 SUPERFAMILY Homeodomain-like 16 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0307 Alju-ChrAlju08 2250498 2251865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0307 15 124 MYB Transcription Factor Family AT1G17950 82.727 2.16e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju08g0307 Myb_DNA-bind_6 7.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0307 08 2250498 2251865 Alju07g2739 07 52852053 52855427 CCT
Alju08g0307 08 2250498 2251865 Alju08g0307 08 2250498 2251865 ECH