Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0276 ATGGAGCAGAGCATCCTATGCAAGTACTCAGTGCATCACAGCGTTACCAAGAAGCTCGCAAGGCCCAAGGCCTCCGATACGAGCAAGCCGACAGAGCCCCGAGTCGTACGGATATCCGTAACTGATCCGGACGCCACAGACTCCTCCAGCGACGAAGAAGGAGAGTTACTGGGGCGACCCAGAGTGAAGCGGTACGTGAACCAGATTGACATCGAAACTGGCGCGAGAAACGGGGCCCTCCCCAACAATGCCCGGAAGAGGCCCTCCGGAAGCACCGCGACTTGCCGGCGGCCGGCAAAGGCTTCCGCGGCGAATACCGGCAGGAAGTTCCGAGGTGTACGGCAAAGACCATGGGGGAAATGGGCGGCAGAGATTCGAGATCCAGCAAGACGAGTACGGCTATGGTTGGGGACCTATGATACAGCAGAGGAAGCGGCCATGGTGTACGATAATGCGGCGATTAAGCTGCGAGGTCCCGATGCTCTGACGAACTTTGCAACGCCACCGGCAAGGGAAAAGGTCGAAGAAGAAGAAGTAGAAGTAGAAGTGACCGAGAAGCCGGAAATGAAAGTTTCAGTACAGTCAGAAGCATCCGGTTCGGGCTACGATTGGGGAGAGGAGTTTCATAATCTTTCGTCTCCGACATCGGTGCTTCAGTTTACAAGCAATTCGAGCGAGGAAGCAGAGCCGGAAAAAGCCACGGAAGCATGCGGAACAGGGGCGGAAAGAGAAGAAACTGTGGAAGAGCCATTTAGGGAGTGCGAAGGGGAAACAAGTCATAGGAGATTGTGGGAGGAGGAGGAGTACTGGAGGATAGAGATGCCGGTGTGGGATGATGTGTTGATGAATTTTGAAACGCCAGAATACTCGCCGGTGATGTGGGAAGAACCGTCAACGTTGTACTGTGAAACGACGACGAGGGTGATGGCGGAGGAGATTGGAAGCGTGGGGGAGACAGATTGGGAGAGAATGTGCTCGCCGTCAGGGATGTGCCAGGTGGACGATCTCTTTCAAGACATATTGTTAGGGTCAGATCCTCTGGTGGCGCTCTGA 1053 0.5499 MEQSILCKYSVHHSVTKKLARPKASDTSKPTEPRVVRISVTDPDATDSSSDEEGELLGRPRVKRYVNQIDIETGARNGALPNNARKRPSGSTATCRRPAKASAANTGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFATPPAREKVEEEEVEVEVTEKPEMKVSVQSEASGSGYDWGEEFHNLSSPTSVLQFTSNSSEEAEPEKATEACGTGAEREETVEEPFRECEGETSHRRLWEEEEYWRIEMPVWDDVLMNFETPEYSPVMWEEPSTLYCETTTRVMAEEIGSVGETDWERMCSPSGMCQVDDLFQDILLGSDPLVAL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0276 350 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Alju08g0276 350 MobiDBLite consensus disorder prediction 223 247 - -
Alju08g0276 350 MobiDBLite consensus disorder prediction 16 59 - -
Alju08g0276 350 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Alju08g0276 350 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
Alju08g0276 350 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 248 - -
Alju08g0276 350 MobiDBLite consensus disorder prediction 84 99 - -
Alju08g0276 350 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Alju08g0276 350 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Alju08g0276 350 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Alju08g0276 350 MobiDBLite consensus disorder prediction 228 247 - -
Alju08g0276 350 MobiDBLite consensus disorder prediction 74 111 - -
Alju08g0276 350 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Alju08g0276 350 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Alju08g0276 350 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0276 Alju-ChrAlju08 2019265 2020317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0276 7 227 AP2-EREBP Transcription Factor Family AT4G27950 48.458 7.02e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju08g0276 AP2 6.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0276 08 2019265 2020317 Alju08g0276 08 2019265 2020317 ECH